main.yml CI installs from pyproject.toml (#90)

* main.yml CI installs from pyproject

* specify engine

* swap netcdf4 for h5netcdf

.github/workflows/main.yml

@@ -26,24 +26,18 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - name: Create conda environment
-        uses: mamba-org/provision-with-micromamba@main
+      - name: Setup Python
+        id: setup-python
+        uses: actions/setup-python@v5
         with:
-          cache-downloads: true
-          micromamba-version: 'latest'
-          environment-file: ci/environment.yml
-          extra-specs: |
-            python=${{ matrix.python-version }}
-
-      - name: Conda info
-        run: conda info
+          python-version: ${{ matrix.python-version }}
+          cache: pip
+          cache-dependency-path: pyproject.toml
 
       - name: Install virtualizarr
         run: |
            python -m pip install -e  ".[test]"
 
-      - name: Conda list
-        run: conda list
 
       - name: Running Tests
         run: |

pyproject.toml

@@ -21,23 +21,27 @@ classifiers = [
 requires-python = ">=3.9"
 dynamic = ["version"]
 dependencies = [
-    "xarray",
+    "xarray@git+https://github.com/TomNicholas/xarray.git@concat-no-indexes#egg=xarray",
     "kerchunk==0.2.2",
+    "h5netcdf",
     "pydantic",
+    "numpy",
+    "ujson",
     "packaging",
 ]
 
 [project.optional-dependencies]
 test = [
+    "codecov",
     "pre-commit",
     "pytest-mypy",
+    "pytest-cov",
     "pytest",
     "scipy",
     "pooch",
-]
-
-
+    "ruff",
 
+]
 
 
 [project.urls]

virtualizarr/tests/test_kerchunk.py

@@ -157,7 +157,8 @@ def test_automatically_determine_filetype_netcdf3_netcdf4():
 
     # write two version of NetCDF
     ds.to_netcdf(netcdf3_file_path, engine="scipy", format="NETCDF3_CLASSIC")
-    ds.to_netcdf(netcdf4_file_path)
+    ds.to_netcdf(netcdf4_file_path, engine="h5netcdf")
+
     assert FileType("netcdf3") == _automatically_determine_filetype(netcdf3_file_path)
     assert FileType("netcdf4") == _automatically_determine_filetype(netcdf4_file_path)