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Add copy_tree_with_update method for efficient directory copy #1355

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Introduces copy_tree_with_update method which ensures that only new or updated files are copied from source to destination. This replaces the previous copytree call in the inject_vendor_files method, improving the efficiency of file copying operations.

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Introduces `copy_tree_with_update` method which ensures that only new or updated files are copied from source to destination. This replaces the previous `copytree` call in the `inject_vendor_files` method, improving the efficiency of file copying operations.
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