use meson-python

xgcm · Jun 26, 2024 · 47e7536 · 47e7536
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diff --git a/.gitattributes b/.gitattributes
diff --git a/.github/dependabot.yml b/.github/dependabot.yml
@@ -0,0 +1,15 @@
+# See https://docs.github.com/en/code-security/supply-chain-security/keeping-your-dependencies-updated-automatically/keeping-your-actions-up-to-date-with-dependabot
+
+version: 2
+updates:
+
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "daily"
+    labels:
+      - "Bot"
+    groups:
+      github-actions:
+        patterns:
+          - '*'
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -0,0 +1,35 @@
+name: Full Tests
+
+on:
+  pull_request:
+  push:
+    # branches: [main]
+
+jobs:
+  run:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        python-version: [ "3.9", "3.10", "3.11", "3.12" ]
+        os: [ubuntu-latest]
+      fail-fast: false
+
+    steps:
+    - uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4
+
+    - name: Setup Micromamba Python ${{ matrix.python-version }}
+      uses: mamba-org/setup-micromamba@422500192359a097648154e8db4e39bdb6c6eed7 #v1
+      with:
+        environment-name: TEST
+        init-shell: bash
+        create-args: >-
+          python=${{ matrix.python-version }} pip python-build compilers --channel conda-forge
+
+    - name: Install wheel and run tests
+      shell: bash -l {0}
+      run: >
+        python -m pip install -e . --no-deps --force-reinstall
+        && python -m build --wheel . --outdir dist
+        && cp -r test/ dist/
+        && cd dist && pip install pytest *.whl
+        && python -m pytest -rxs test
diff --git a/.travis.yml b/.travis.yml
diff --git a/MANIFEST.in b/MANIFEST.in
@@ -1,3 +1,18 @@
 include LICENSE
-include versioneer.py
-include xcape/_version.py
+include README.md
+include pyproject.toml
+
+graft xcape
+
+prune .github
+prune *.egg-info
+prune doc
+prune test
+
+exclude .coveragerc
+exclude ruff.toml
+exclude .gitignore
+exclude .isort.cfg
+exclude .pre-commit-config.yaml
+exclude *.yml
+exclude xcape/_version.py
diff --git a/README.md b/README.md
@@ -0,0 +1,26 @@
+# xcape
+
+Fast convective parameters for numpy, dask, and xarray
+
+[![pypi package](https://badge.fury.io/py/xcape.svg)](https://badge.fury.io/py/xcape)
+[![conda
+forge](https://anaconda.org/conda-forge/xcape/badges/version.svg)](https://anaconda.org/conda-forge/xcape)
+<!-- TODO: GHA [![travis-ci build status](https://travis-ci.com/xgcm/xcape.svg?branch=master)](https://travis-ci.com/xgcm/xcape) -->
+[![code coverage](https://codecov.io/github/xgcm/xcape/coverage.svg?branch=master)](https://codecov.io/github/xgcm/xcape?branch=master)
+[![documentation status](https://readthedocs.org/projects/xcape/badge/?version=latest)](http://xcape.readthedocs.org/en/stable/?badge=latest)
+[![license](https://img.shields.io/github/license/mashape/apistatus.svg)](https://github.com/xgcm/xcape)
+[![DOI](https://zenodo.org/badge/202226985.svg)](https://zenodo.org/badge/latestdoi/202226985)
+
+For more information, including installation instructions, read the full
+[xcape documentation](https://xcape.readthedocs.io/en/latest/).
+
+## Funding Support
+
+Development of this package was supported by NSF award OCE-1740648
+(original Pangeo EarthCube award).
+
+## To Install Development Version
+
+```shell
+python setup.py build_ext pip install -e .
+```
diff --git a/README.rst b/README.rst
diff --git a/meson.build b/meson.build
@@ -0,0 +1,175 @@
+project(
+    'xcape',
+    ['c', 'fortran'],
+    version: '1.0',
+    meson_version: '>= 1.1.0',
+    default_options: ['warning_level=1', 'buildtype=release']
+)
+
+py = import('python').find_installation(pure: false)
+py_dep = py.dependency()
+
+# NumPy include directory - needed in all submodules
+incdir_numpy = run_command(py,
+  [
+    '-c',
+    'import os; os.chdir(".."); import numpy; print(numpy.get_include())'
+  ],
+  check: true
+).stdout().strip()
+
+inc_np = include_directories(incdir_numpy)
+
+incdir_f2py = incdir_numpy / '..' / '..' / 'f2py' / 'src'
+inc_f2py = include_directories(incdir_f2py)
+fortranobject_c = incdir_f2py / 'fortranobject.c'
+
+
+CAPE_CODE_model_lev = custom_target(
+    'CAPE_CODE_model_lev',
+    input: ['xcape/fortran/CAPE_CODE_model_lev.pyf', 'xcape/fortran/CAPE_CODE_model_lev.f90'],
+    output: ['CAPE_CODE_model_levmodule.c', 'CAPE_CODE_model_lev-f2pywrappers.f'],
+    command : [py, '-m', 'numpy.f2py', '@INPUT@', '-m', 'CAPE_CODE_model_lev', '--lower'],
+)
+
+py.extension_module(
+    'CAPE_CODE_model_lev',
+    ['xcape/fortran/CAPE_CODE_model_lev.f90', CAPE_CODE_model_lev],
+    fortranobject_c,
+    include_directories: [inc_np, inc_f2py],
+    dependencies: [py_dep],
+    install : true,
+    subdir: 'xcape/fortran',
+)
+
+CAPE_CODE_pressure_lev = custom_target(
+    'CAPE_CODE_pressure_lev',
+    input: ['xcape/fortran/CAPE_CODE_pressure_lev.pyf', 'xcape/fortran/CAPE_CODE_pressure_lev.f90'],
+    output: ['CAPE_CODE_pressure_levmodule.c', 'CAPE_CODE_pressure_lev-f2pywrappers.f'],
+    command : [py, '-m', 'numpy.f2py', '@INPUT@', '-m', 'CAPE_CODE_pressure_lev', '--lower'],
+)
+
+py.extension_module(
+    'CAPE_CODE_pressure_lev',
+    ['xcape/fortran/CAPE_CODE_pressure_lev.f90', CAPE_CODE_pressure_lev],
+    fortranobject_c,
+    include_directories: [inc_np, inc_f2py],
+    dependencies: [py_dep],
+    install : true,
+    subdir: 'xcape/fortran',
+)
+
+Bunkers_model_lev = custom_target(
+    'Bunkers_model_lev',
+    input: ['xcape/fortran/Bunkers_model_lev.pyf', 'xcape/fortran/Bunkers_model_lev.f90'],
+    output: ['Bunkers_model_levmodule.c', 'Bunkers_model_lev-f2pywrappers.f'],
+    command : [py, '-m', 'numpy.f2py', '@INPUT@', '-m', 'Bunkers_model_lev', '--lower'],
+)
+
+py.extension_module(
+    'Bunkers_model_lev',
+    ['xcape/fortran/Bunkers_model_lev.f90', Bunkers_model_lev],
+    fortranobject_c,
+    include_directories: [inc_np, inc_f2py],
+    dependencies: [py_dep],
+    install : true,
+    subdir: 'xcape/fortran',
+)
+
+Bunkers_pressure_lev = custom_target(
+    'Bunkers_pressure_lev',
+    input: ['xcape/fortran/Bunkers_pressure_lev.pyf', 'xcape/fortran/Bunkers_pressure_lev.f90'],
+    output: ['Bunkers_pressure_levmodule.c', 'Bunkers_pressure_lev-f2pywrappers.f'],
+    command : [py, '-m', 'numpy.f2py', '@INPUT@', '-m', 'Bunkers_pressure_lev', '--lower'],
+)
+
+py.extension_module(
+    'Bunkers_pressure_lev',
+    ['xcape/fortran/Bunkers_pressure_lev.f90', Bunkers_pressure_lev],
+    fortranobject_c,
+    include_directories: [inc_np, inc_f2py],
+    dependencies: [py_dep],
+    install : true,
+    subdir: 'xcape/fortran',
+)
+
+SREH_model_lev = custom_target(
+    'SREH_model_lev',
+    input: ['xcape/fortran/SREH_model_lev.pyf', 'xcape/fortran/SREH_model_lev.f90'],
+    output: ['SREH_model_levmodule.c', 'SREH_model_lev-f2pywrappers.f'],
+    command : [py, '-m', 'numpy.f2py', '@INPUT@', '-m', 'SREH_model_lev', '--lower'],
+)
+
+py.extension_module(
+    'SREH_model_lev',
+    ['xcape/fortran/SREH_model_lev.f90', SREH_model_lev],
+    fortranobject_c,
+    include_directories: [inc_np, inc_f2py],
+    dependencies: [py_dep],
+    install : true,
+    subdir: 'xcape/fortran',
+)
+
+SREH_pressure_lev = custom_target(
+    'SREH_pressure_lev',
+    input: ['xcape/fortran/SREH_pressure_lev.pyf', 'xcape/fortran/SREH_pressure_lev.f90'],
+    output: ['SREH_pressure_levmodule.c', 'SREH_pressure_lev-f2pywrappers.f'],
+    command : [py, '-m', 'numpy.f2py', '@INPUT@', '-m', 'SREH_pressure_lev', '--lower'],
+)
+
+py.extension_module(
+    'SREH_pressure_lev',
+    ['xcape/fortran/SREH_pressure_lev.f90', SREH_pressure_lev],
+    fortranobject_c,
+    include_directories: [inc_np, inc_f2py],
+    dependencies: [py_dep],
+    install : true,
+    subdir: 'xcape/fortran',
+)
+
+stdheight_2D_model_lev = custom_target(
+    'stdheight_2D_model_lev',
+    input: ['xcape/fortran/stdheight_2D_model_lev.pyf', 'xcape/fortran/stdheight_2D_model_lev.f90'],
+    output: ['stdheight_2D_model_levmodule.c', 'stdheight_2D_model_lev-f2pywrappers.f'],
+    command : [py, '-m', 'numpy.f2py', '@INPUT@', '-m', 'stdheight_2D_model_lev', '--lower'],
+)
+
+py.extension_module(
+    'stdheight_2D_model_lev',
+    ['xcape/fortran/stdheight_2D_model_lev.f90', stdheight_2D_model_lev],
+    fortranobject_c,
+    include_directories: [inc_np, inc_f2py],
+    dependencies: [py_dep],
+    install : true,
+    subdir: 'xcape/fortran',
+)
+
+stdheight_2D_pressure_lev = custom_target(
+    'stdheight_2D_pressure_lev',
+    input: ['xcape/fortran/stdheight_2D_pressure_lev.pyf', 'xcape/fortran/stdheight_2D_pressure_lev.f90'],
+    output: ['stdheight_2D_pressure_levmodule.c', 'stdheight_2D_pressure_lev-f2pywrappers.f'],
+    command : [py, '-m', 'numpy.f2py', '@INPUT@', '-m', 'stdheight_2D_pressure_lev', '--lower'],
+)
+
+py.extension_module(
+    'stdheight_2D_pressure_lev',
+    ['xcape/fortran/stdheight_2D_pressure_lev.f90', stdheight_2D_pressure_lev],
+    fortranobject_c,
+    include_directories: [inc_np, inc_f2py],
+    dependencies: [py_dep],
+    install : true,
+    subdir: 'xcape/fortran',
+)
+
+
+py.install_sources(
+    'xcape/__init__.py',
+    'xcape/cape_fortran.py',
+    'xcape/cape_numba.py',
+    'xcape/core.py',
+    'xcape/duck_array_ops.py',
+    'xcape/srh.py',
+    'xcape/stdheight.py',
+    'xcape/xarray.py',
+    subdir: 'xcape'
+)