actions: osx: Install less.

wwood · Sep 17, 2024 · f62adf7 · f62adf7
1 parent 2f775ba
commit f62adf7
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/.github/workflows/test-coverm.yml b/.github/workflows/test-coverm.yml
@@ -36,7 +36,7 @@ jobs:
       fail-fast: false
       matrix:
         os: ["macos-latest"]
-        python-version: ["3.11"]
+        python-version: ["3.8"] # Must use 3.8 so that minimap2 installs
     steps:
       - uses: actions/checkout@v4
       - uses: conda-incubator/setup-miniconda@v3

diff --git a/coverm-osx.yml b/coverm-osx.yml
@@ -8,6 +8,6 @@ dependencies:
   - minimap2 >=2.24
   - bwa >=0.7.17
   # - bwa-mem2 # bwa-mem2 does not run on osx
-  - dashing >= 0.4.0
+  # - dashing >= 0.4.0 # not available on osx-arm64
   - fastani >= 1.3
-  - strobealign >= 0.11.0 # newest version at time of implementation
+  # - strobealign >= 0.11.0 # not available on osx-arm64
diff --git a/src/mapping_index_maintenance.rs b/src/mapping_index_maintenance.rs
@@ -102,7 +102,7 @@ impl TemporaryIndexStruct {
                     | MappingProgram::STROBEALIGN => {}
                 };
                 if let Some(t) = num_threads {
-                    cmd.arg("-t").arg(&format!("{}", t));
+                    cmd.arg("-t").arg(format!("{}", t));
                 }
                 cmd.arg("-d").arg(&index_path).arg(reference_path);
             }