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wtsi-hgi · Oct 22, 2023 · caa236f · caa236f
1 parent 2213404
commit caa236f
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/assets/deploy_scripts/bsub_test.sh b/assets/deploy_scripts/bsub_test.sh
@@ -11,10 +11,10 @@ export SINGULARITY_TMPDIR=$PWD/work/tmp
 export TEMP=$PWD/work/tmp
 export TMP_DIR=$PWD/work/tmp
 
-echo press ENTER to not fetch containers, otherwise provide writable path:
+echo press ENTER to NOT fetch containers, otherwise provide writable path:
 read varname
 
-if "$varname"==''
+if ["$varname" = ''];
     then
         export NXF_SINGULARITY_CACHEDIR='/software/hgi/containers/yascp'
         export SINGULARITY_DISABLE_CACHE=0

diff --git a/conf/base.conf b/conf/base.conf
@@ -328,8 +328,8 @@ process {
 
     withName: DYNAMIC_DONOR_EXCLUSIVE_SNP_SELECTION{
         cpus = 5
-        time   = { 12.h   * task.attempt }
-        memory = { 50.GB * task.attempt }
+        time   = { 5.h   * task.attempt }
+        memory = { 30.GB * task.attempt }
     }
 
     withName: VIREO{