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remove sanger specific conf
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maxozo committed Oct 18, 2023
1 parent 08ecbb4 commit aaf2fc8
Showing 1 changed file with 1 addition and 8 deletions.
9 changes: 1 addition & 8 deletions conf/base.conf
Original file line number Diff line number Diff line change
Expand Up @@ -244,15 +244,8 @@ process {
cpus = 1
maxForks=4
errorStrategy = 'retry'
queue = { task.attempt > 1 ? 'gpu-huge' : 'gpu-normal' }
clusterOptions = { "-M "+params.mem1*task.attempt+" -R 'select[ngpus>0 && mem>="+params.mem1*task.attempt+"] rusage[ngpus_physical=1.00,mem="+params.mem1*task.attempt+"] span[ptile=1]' -gpu 'mode=exclusive_process'" }
memory = '' // set to null '' as already specified in clusterOptions

memory = '' // set to null '' as already specified in clusterOptions
time = { 12.h * task.attempt }
containerOptions = {
workflow.containerEngine == "singularity" ? '--containall --cleanenv --nv -B /tmp':
( workflow.containerEngine == "docker" ? '--gpus all': null )
}
}

withName:cluster_validate_resolution_keras{
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