small fix

conf/base.conf

@@ -362,5 +362,4 @@ process {
 
 singularity {
   enabled = true
-  runOptions = '--bind /lustre --bind /software --bind /nfs --no-home'
 }

conf/extra_confs/leicester/alice_new_setup.conf

@@ -0,0 +1,33 @@
+//Profile config names for nf-core/configs
+params {
+  config_profile_description = 'ALICE and SPECTRE cluster profile provided by nf-core/configs.'
+  config_profile_contact = 'Matiss Ozols - [email protected] | [email protected] | [email protected] | [email protected]'
+
+  max_cpus = 24
+  max_memory = 240.GB
+  max_time = 168.h
+
+}
+
+singularity {
+  enabled = true
+  envWhitelist = 'TZ'
+}
+
+process {
+
+  executor = 'slurm'
+  cpus   = 1
+  pollInterval = '1 min'
+  queueStatInterval = '2 min'   
+  memory =  24.GB
+  time   = 12.h  
+
+
+  //queue = { task.time <= 24.h ? 'short' : task.time > 672.h ? 'long' : 'medium'}
+  withLabel: gpu {
+      beforeScript = 'module load cuda11.4/toolkit/11.4.1'
+      clusterOptions = '-l nodes=1:ppn=4:gpus=1 -l vmem=24g'
+      queue = 'gpu'
+  }
+}

modules/nf-core/modules/umap/main.nf

@@ -55,9 +55,6 @@ workflow UMAP {
                                      // the 'flatMap' emits each of these
                                      // aggregation list as a single item
 
-        Channel.of('key',outdir,anndata,metadata,pcs,reduced_dims,all_umaps).set{all_umaps2}               
-        umap_gather_input.view()
-        all_umaps2.view()
         // Gather step.
         // Gather by tuple ... if we just to a collect, then will get all
         // umap_calculate calls, not split by reduced_dims. See link below: