Tweak to celltype annotation #28

	name: nf-core CI
	# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
	on:
	push:
	branches:
	- dev
	pull_request:
	release:
	types: [published]

	# Uncomment if we need an edge release of Nextflow again
	# env: NXF_EDGE: 1

	jobs:
	test:
	name: Run workflow tests
	# Only run on push if this is the nf-core dev branch (merged PRs)
	if: ${{ github.event_name != 'push' \|\| (github.event_name == 'push' && github.repository == 'nf-core/scdecon') }}
	runs-on: ubuntu-latest
	env:
	NXF_VER: ${{ matrix.nxf_ver }}
	NXF_ANSI_LOG: false
	strategy:
	matrix:
	# Nextflow versions: check pipeline minimum and current latest
	nxf_ver: ['21.04.0', '']
	steps:
	- name: Check out pipeline code
	uses: actions/checkout@v2

	- name: Install Nextflow
	env:
	CAPSULE_LOG: none
	run: \|
	wget -qO- get.nextflow.io \| bash
	sudo mv nextflow /usr/local/bin/

	- name: Run pipeline with test data
	# TODO nf-core: You can customise CI pipeline run tests as required
	# For example: adding multiple test runs with different parameters
	# Remember that you can parallelise this by using strategy.matrix
	run: \|
	nextflow run ${GITHUB_WORKSPACE} -profile test,docker

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