Add Sphinx docs and enable ReadTheDocs build #34
Workflow file for this run
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| name: Checks | |
| on: | |
| push: | |
| branches: [main] | |
| tags: ['*'] | |
| pull_request: | |
| branches: [main] | |
| env: | |
| PYTEST_ADDOPTS: --color=yes | |
| PIP_PROGRESS_BAR: "off" | |
| defaults: | |
| run: | |
| # -l: login shell, needed when using Conda: | |
| shell: bash -l {0} | |
| jobs: | |
| code-formatting: | |
| name: Check code is formatted (Black) | |
| # OS and/or Python version don't make a difference, so we choose ubuntu and 3.12 as defaults | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| - name: Install Black | |
| # unlike the other jobs, we don't need to install WaterTAP and/or all the dev dependencies, | |
| # but we still want to specify the Black version to use in requirements-dev.txt for local development | |
| # so we extract the relevant line and pass it to a simple `pip install` | |
| run: | | |
| black_requirement="$(grep '^black==' requirements-dev.txt)" | |
| pip install "$black_requirement" | |
| - name: Run Black to verify that the committed code is formatted | |
| run: | | |
| black --check . | |
| pytest: | |
| name: pytest (${{ matrix.os }}/${{ matrix.python-version }}/${{ matrix.install-mode }}) | |
| runs-on: ${{ matrix.os-version }} | |
| needs: [code-formatting] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| install-mode: | |
| - dev | |
| - standard | |
| python-version: | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| os: | |
| - linux | |
| - win64 | |
| include: | |
| - os: linux | |
| os-version: ubuntu-22.04 | |
| - os: win64 | |
| os-version: windows-2022 | |
| - install-mode: dev | |
| python-version: "3.11" # choice of Python version is arbitrary among those in matrix | |
| coverage: "true" | |
| - install-mode: dev | |
| python-version: "3.10" | |
| mpi: "true" | |
| steps: | |
| - if: matrix.install-mode == 'dev' | |
| uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: ${{ matrix.install-mode == 'dev' && 'parameter-sweep-dev' || 'parameter-sweep' }} | |
| - if: matrix.install-mode == 'dev' | |
| name: Install (dev) | |
| run: | | |
| pip install -r requirements-dev.txt | |
| - if: matrix.install-mode == 'standard' | |
| name: Install (standard) | |
| run: | | |
| pip install "git+${{ format('{0}/{1}@{2}', github.server_url, github.repository, github.ref) }}" | |
| - name: Set up IDAES solvers | |
| run: | | |
| idaes get-extensions --verbose | |
| - if: matrix.coverage | |
| name: Enable coverage for pytest | |
| run: echo PYTEST_ADDOPTS="$PYTEST_ADDOPTS --cov --cov-report=xml" >> $GITHUB_ENV | |
| - name: Run pytest | |
| run: | | |
| pip install pytest # ensure pytest is installed (should do nothing if already present from requirements-dev.txt) | |
| pytest --pyargs parameter_sweep | |
| - name: Upload coverage report as job artifact | |
| if: matrix.coverage | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-report-${{ matrix.os }} | |
| path: coverage.xml | |
| if-no-files-found: error | |
| - if: matrix.mpi | |
| name: Collect coverage for MPI-using code | |
| run: | | |
| conda install --quiet --yes mpi4py | |
| mpiexec -n 2 \ | |
| coverage run --parallel-mode \ | |
| -m mpi4py -m pytest \ | |
| src/parameter_sweep/tests/test*parameter_sweep.py \ | |
| src/parameter_sweep/loop_tool/tests/test*loop_tool.py \ | |
| --no-cov | |
| # merge into single report | |
| coverage combine | |
| # convert to XML | |
| coverage xml | |
| - name: Upload coverage report as job artifact | |
| if: matrix.mpi | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-report-mpi-${{ matrix.os }} | |
| path: coverage.xml | |
| if-no-files-found: error | |
| upload-coverage: | |
| name: Upload coverage report (Codecov) | |
| needs: [pytest] | |
| runs-on: ubuntu-latest | |
| steps: | |
| # the checkout step is needed to have access to codecov.yml | |
| - uses: actions/checkout@v4 | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: coverage-report-* | |
| - name: Upload coverage report to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: true | |
| verbose: true | |
| # NOTE: secrets are not available for pull_request workflows | |
| # However, as of 2024-02-10, Codecov is still allowing tokenless upload from PRs | |
| # but does require token for other workflows e.g. merge to `main` | |
| # see https://github.com/codecov/codecov-action/issues/1274#issuecomment-1934437359 | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| build-docs: | |
| name: Build docs (Sphinx) | |
| needs: [code-formatting] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - run: pip install -r requirements-dev.txt | |
| - run: make -C docs html |