Skip to content

Commit

Permalink
#467 add R-bundle-CRAN, LIQA ec
Browse files Browse the repository at this point in the history
  • Loading branch information
pavelToman committed Dec 10, 2024
1 parent b504137 commit a5ff0d7
Show file tree
Hide file tree
Showing 2 changed files with 3 additions and 12 deletions.
6 changes: 2 additions & 4 deletions 467_scNanoGPS/liqa.eb
Original file line number Diff line number Diff line change
Expand Up @@ -20,18 +20,16 @@ checksums = ['f8b2e6f0226d99f513d17be3758e6b3e2e9b7b40579f840d28737e827358850e']
# OK Scipy
# OK UPDATED Lifelines - already lifelines in synthcity not used 2023a
# OK R
# ADD_TO_CRAN gcmr
# OK ADD_TO_CRAN gcmr
# OK betareg

# builddependencies = [('poetry', '1.5.1')]
dependencies = [
('Python', '3.11.3'),
('SciPy-bundle', '2023.07'),
('Pysam', '0.22.0'),
('lifelines', '0.28.0'),
('R', '4.3.2'),
# ('R-bundle-CRAN', '2023.12'),
('R-bundle-CRAN-test-gcmr', '2023.12'),
('R-bundle-CRAN', '2023.12'),
]

use_pip = True
Expand Down
9 changes: 1 addition & 8 deletions 467_scNanoGPS/scNanoGPS_v2.eb
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@ checksums = ['60cce1c771283b6d7a3639aa5744acfd6162306d95dd419ad3c265461fdda218']
# OK Scipy
# OK UPDATED Lifelines - already lifelines in synthcity not used 2023a
# OK R
# ADD_TO_CRAN gcmr
# OK ADD_TO_CRAN gcmr
# OK betareg

dependencies = [
Expand All @@ -60,9 +60,6 @@ dependencies = [
('BCFtools', '1.21'),
('gffread', '0.12.7'),
('LIQA', '1.3.4'),
# ('lifelines', '0.28.0'),
# ('R', '4.3.2'),
# ('R-bundle-CRAN', '2023.12'),
# annovar
]

Expand All @@ -75,10 +72,6 @@ exts_default_options = {
}

exts_list = [
# ('liqa', '1.3.4', {
# 'modulename': False,
# 'checksums': ['f8b2e6f0226d99f513d17be3758e6b3e2e9b7b40579f840d28737e827358850e'],
# }),
('Distance', '0.1.3', {
'checksums': ['60807584f5b6003f5c521aa73f39f51f631de3be5cccc5a1d67166fcbf0d4551'],
}),
Expand Down

0 comments on commit a5ff0d7

Please sign in to comment.