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Mmligner improvements #143

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Mmligner improvements #143

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pipaj97
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@pipaj97 pipaj97 commented Jun 1, 2022

Description

MMLigner is able to compute multiple significant structural alignments and will output the scores for all of them.
In the current version, we go through the result data and will end up, using the last alignment.
But the ordering is from lower ivalue (good) to higher ivalue (bad).
This means, we take the worst alignment, that MMLigner outputs.

With this change, we will only read the first alignment.

Todos

Notable points that this PR has either accomplished or will accomplish.

  • Break the parsing after the first alignment. (The last value of an alignment is "Compression".)
  • Comment out the superposition part for MMLigner, which is not working correctly and causes errors in CI

Status

  • Ready to go

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codecov-commenter commented Jun 1, 2022

Codecov Report

Merging #143 (c2bc94a) into dev (6a0e0e2) will decrease coverage by 0.21%.
The diff coverage is 100.00%.

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@dominiquesydow dominiquesydow added the module-structure-superposition Concerns opencadd.structure.superposition module label Jul 25, 2022
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Hi @pipaj97, thanks for opening this PR, which seems to fix a bug in the MMLigner superposition. Is there any reason why it is marked as draft and not under review to be merged?

@AndreaVolkamer
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@pipaj97 is this PR still active? should it be reviewed and merged? Or closed?

@pipaj97 pipaj97 added the enhancement New feature or request label Jun 25, 2023
@pipaj97 pipaj97 changed the base branch from master to dev June 25, 2023 12:21
@pipaj97 pipaj97 marked this pull request as ready for review June 25, 2023 12:21
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enhancement New feature or request module-structure-superposition Concerns opencadd.structure.superposition module
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4 participants