Visit the Vivarium Core documentation to learn how to use the core Vivarium engine to create computational biology models. Check out the getting started guide of the documentation.
This codebase serves as a Vivarium interface for the Tellurium bio-simulation package.
By fitting a simulator package to the Vivarium vivarium.core.processes.Process() interface, you
allow for this process type to be involved in larger compositions and orchestrations.
- create a virtual environment for Python (recommended).
- Activate the aforementioned Python environment.
cd vivarium-tellurium, which is the root of the repo.pip install -e .to install all of the required deps into your environment.