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Monomers ports #1

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Monomers ports #1

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d0121d7
use monomers ports schema
blairlyons May 16, 2023
654827a
generalize spatial units
blairlyons May 16, 2023
a016f83
only create ReaDDy system at init
blairlyons May 16, 2023
a2c23af
add radius to particle data
blairlyons May 16, 2023
1842cda
don't run as test since no assertions, update to match other examples
blairlyons May 16, 2023
4edbff6
pass monomers state (finish ports update)
blairlyons May 16, 2023
cbf1c75
Simularium emitter for monomers
blairlyons May 17, 2023
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10 changes: 7 additions & 3 deletions vivarium_readdy/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,11 @@ def get_module_version():


from .processes.readdy_process import ReaddyProcess # noqa: F401
from vivarium.core.registry import emitter_registry # noqa: F401
from .processes.simularium_emitter import SimulariumEmitter # noqa: F401
from .util import monomer_ports_schema # noqa: F401
from .util import create_monomer_update # noqa: F401
from .util import agents_update # noqa: F401

emitter_registry.register("simularium", SimulariumEmitter)
from .processes.simularium_monomer_emitter import SimulariumMonomerEmitter # noqa: F401
from vivarium.core.registry import emitter_registry

emitter_registry.register("simularium_monomers", SimulariumMonomerEmitter)
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