Add RGI #786
Add RGI #786
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| @@ -5211,6 +5211,9 @@ tools: | |||
| owner: iuc | |||
| tool_panel_section_label: Virology | |||
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| - name: rgi # Includes a DM. | |||
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Thanks Helena. This is not an IUC tool and should go into some other file I guess. We might also need to check every version - so not auto-update this one?
This also looks a bit non-standard and I'm wondering if there is more to setup up.
#if $db_opts.db_opts_selector == "default":
export DB_PATH='${__tool_data_path__}/rgi_databases/_default' &&
export DATA_PATH="\$_GALAXY_JOB_TMP_DIR" &&
mkdir -p "\$DB_PATH" &&
#end if
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Oh, you're right @ non-iuc, and agreed at not auto-updating. Do you have a preference for which file?
I'm wondering if there is more to setup up.
I've run this in my internal galaxy, and seems to run fine once the included DM's been run.
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Yes, the DM (which also should be in a separate repo) is working but there is a 3rd option which is "default" and I'm not sure how this should work.
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Yes, I guess the default option would not work. I have not been using it.
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Yes, the DM (which also should be in a separate repo) is working but there is a 3rd option which is "default" and I'm not sure how this should work.
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(Did you intend to paste the same comment again?)
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No, just bad internet at the conference ...
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How should we proceed? Do you know the author of the wrapper?
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I do not know the author of the wrapper
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I will close it for now. it isn't enough of a priority, and I do not have time to move their tools into iuc/negotiate with them/rewrite their tool to not use a strange local option. |
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If you need the tool we can work on that and try to get it into IUC for you. |
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