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Move rule cz-pulsar_alphafold to tools.yml #919

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merged 3 commits into from
Oct 2, 2023
Merged

Move rule cz-pulsar_alphafold to tools.yml #919

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36538cd
Move rule cz-pulsar_alphafold to tools.yml
kysrpex Oct 2, 2023
3c2b413
Test if rule cz-pulsar_alphafold works in tools.yml
kysrpex Oct 2, 2023
e09c6e2
Revert "Test if rule cz-pulsar_alphafold works in tools.yml"
kysrpex Oct 2, 2023
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8 changes: 0 additions & 8 deletions files/galaxy/tpv/tool_defaults.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -42,14 +42,6 @@ tools:
entity.tpv_tags = entity.tpv_tags.combine(
TagSetManager(tags=[pulsar_tag])
)
- id: cz-pulsar_alphafold
if: |
all((
"cz-pulsar" in {tag.value for tag in entity.tpv_tags.tags},
tool.id.startswith("toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold"),
helpers.tool_version_gte(tool, '2.3.1'),
))
gpus: 1

rank: |
final_destinations = helpers.weighted_random_sampling(candidate_destinations)
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7 changes: 7 additions & 0 deletions files/galaxy/tpv/tools.yml
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Expand Up @@ -267,6 +267,13 @@ tools:
- id: model_preset_multimer
if: job.get_param_values(app).get("model_preset") == "multimer"
mem: 69
- id: cz-pulsar_alphafold
if: |
(
"cz-pulsar" in {tag.value for tag in entity.tpv_tags.tags}
and helpers.tool_version_gte(tool, '2.3.1')
)
gpus: 1
scheduling:
require:
- singularity
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