fix alphafold env setup

usegalaxy-eu · May 10, 2024 · d39537d · d39537d
1 parent 174027d
commit d39537d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/files/galaxy/tpv/tools.yml b/files/galaxy/tpv/tools.yml
@@ -288,7 +288,7 @@ tools:
           from random import SystemRandom
           if SystemRandom().random() < 0.10:
               entity.gpus = 1
-              entity.params.update({'singularity_run_extra_arguments': '--env ALPHAFOLD_DB=/data/db/databases/alphafold_databases,ALPHAFOLD_USE_GPU=True'})
+              entity.params['singularity_run_extra_arguments'] = '--env ALPHAFOLD_DB=/data/db/databases/alphafold_databases,ALPHAFOLD_USE_GPU=True'
         # tweak amount of requested memory depending on the AlphaFold model to be run
       - id: model_preset_multimer
         if: job.get_param_values(app).get("model_preset") == "multimer"