trinity: Remove -XX:MaxPermSize=2G from _JAVA_OPTIONS

Version 2.15.1 of Trinity no longer accepts the deprecated Java option `-XX:MaxPermSize`. For more information, see issues galaxyproject/usegalaxy-tools#630 and usegalaxy-eu/issues#473
usegalaxy-eu · Sep 20, 2023 · b430546 · b430546
1 parent 3c3c45e
commit b430546
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/files/galaxy/tpv/tools.yml b/files/galaxy/tpv/tools.yml
@@ -736,6 +736,10 @@ tools:
     env:
       _JAVA_OPTIONS: -XX:MaxPermSize=2G -Xmx{int(mem)}G -Xms1G -Djava.io.tmpdir=/data/2/galaxy_db/tmp -Duser.home=/data/2/galaxy_db/tmp
     rules:
+      - if: helpers.tool_version_gte(tool, '2.15.1')
+        # see usegalaxy-eu/issues#473: https://github.com/usegalaxy-eu/issues/issues/473
+        env:
+       	  _JAVA_OPTIONS: -Xmx{int(mem)}G -Xms1G -Djava.io.tmpdir=/data/2/galaxy_db/tmp -Duser.home=/data/2/galaxy_db/tmp
       - if: 0.1 <= input_size < 1
         cores: 20
         mem: 100