Merge pull request #1261 from reid-wagner/fragpipe_high_mem

Utilize a high_memory Option in FragPipe Tool
usegalaxy-eu · Jul 24, 2024 · 8b03fef · 8b03fef
2 parents ddead68 + 55f6949
commit 8b03fef
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diff --git a/files/galaxy-test/tpv/tools.yml b/files/galaxy-test/tpv/tools.yml
@@ -815,3 +815,16 @@ tools:
       require:
         - singularity
         - conda
+
+  toolshed.g2.bx.psu.edu/repos/galaxyp/fragpipe/fragpipe/.*:
+    cores: 8
+    mem: 56
+    rules:
+      - id: fragpipe_memory
+        if: |
+          parameters = {p.name: p.value for p in job.parameters}
+          parameters = tool.params_from_strings(parameters, app)
+          high_memory = parameters.get("high_memory", False)
+          high_memory
+        mem: 256
+        cores: 12
diff --git a/files/galaxy/tpv/tools.yml b/files/galaxy/tpv/tools.yml
@@ -1444,3 +1444,12 @@ tools:
   toolshed.g2.bx.psu.edu/repos/galaxyp/fragpipe/fragpipe/.*:
     cores: 8
     mem: 56
+    rules:
+      - id: fragpipe_memory
+        if: |
+          parameters = {p.name: p.value for p in job.parameters}
+          parameters = tool.params_from_strings(parameters, app)
+          high_memory = parameters.get("high_memory", False)
+          high_memory
+        mem: 256
+        cores: 12