Merge pull request #1263 from sanjaysrikakulam/tmp_dir_funannotate_tpv

TPV: Configure tmp dir for funannotate_annotate tool
usegalaxy-eu · Jul 19, 2024 · 12162da · 12162da
2 parents 3e1a641 + 85ae4cd
commit 12162da
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/files/galaxy/tpv/tools.yml b/files/galaxy/tpv/tools.yml
@@ -1313,8 +1313,8 @@ tools:
     inherits: basic_docker_tool
     cores: 8
     mem: 42
-    params:
-      docker_run_extra_arguments: "--mount type=tmpfs,tmpfs-size=2147483648,destination=/tmp"
+    env:
+      _GALAXY_JOB_TMP_DIR: '/tmp'
     rules:
       - id: funannotate_annotate_large_input
         if: input_size > 3.2