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Adding: Clair3, Samtools_coverage, Bamtools split mapped, Split file on column and Updating Minimap2 #1086

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EngyNasr
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Adding and updating tools, present in EU but not in org.au, these tools are needed for foodborne pathogen detection workflow PathoGFAIR to be publically available on org.au server

I also wanted to update Build list tool from '1.1.0' to '1.2.0', but I couldn't find it in which yaml file.

Thanks,
Engy

EngyNasr added 2 commits June 19, 2024 14:21
…ls are needed for foodborne pathogen detection workflow PathoGFAIR to be publically available on org.au server
trial to solve the branch conflict
@cat-bro
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cat-bro commented Sep 10, 2024

Hi Engy,

Sorry for the big delay in replying to this - I was away at GCC and didn't see this PR when it was made.

The __BUILD_LIST__ tool is built-in to Galaxy. Galaxy Australia has been updated to the release_24.1 branch since this issue was raised.

The method for requesting tools on Galaxy Australia is documented here.

Galaxy Australia now has the latest version of all of these tools including clair3 which was installed today. Because of a bug in the clair3 repository (galaxyproject/tools-iuc#6211) we can't install older versions of this.

Best regards,
Catherine

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