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sort loc file by model
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@TomHarrop
TomHarrop committed Jun 19, 2024
1 parent 524fe27 commit 1f86b46
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Showing 2 changed files with 8 additions and 58 deletions.
8 changes: 8 additions & 0 deletions tools/dorado/README.md
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Expand Up @@ -36,3 +36,11 @@ apptainer exec "docker://nanoporetech/dorado:sha${DORADO_HASH}" \
awk -v hash="${DORADO_HASH}" '{print hash "_" $0 "\t" hash "\t" $0 "\t/models/" $0}' \
>> tool-data/dorado_models.loc.sample
```

The loc file doesn't have a header, so you can keep it sorted.

```bash
sort -t$'\t' -k1,1V tool-data/dorado_models.loc.sample \
> tool-data/dorado_models.loc.sample
```

58 changes: 0 additions & 58 deletions tools/dorado/tool-data/dorado_models.loc.sample
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@@ -1,58 +0,0 @@
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_260bps_fast@v4.1.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_260bps_fast@v4.1.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v2 /models/[email protected]_5mCG_5hmCG@v2
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_260bps_hac@v4.1.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_260bps_hac@v4.1.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v2 /models/[email protected]_5mCG_5hmCG@v2
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_260bps_sup@v4.1.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_260bps_sup@v4.1.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v2 /models/[email protected]_5mCG_5hmCG@v2
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_fast@v4.1.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_fast@v4.1.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v2 /models/[email protected]_5mCG_5hmCG@v2
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_fast@v4.2.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_fast@v4.2.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v2 /models/[email protected]_5mCG_5hmCG@v2
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_fast@v4.3.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_fast@v5.0.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v4.1.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v4.1.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v2 /models/[email protected]_5mCG_5hmCG@v2
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v4.3.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mCG_5hmCG@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v1 /models/[email protected]_5mCG_5hmCG@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_5mC_5hmC@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mC_5hmC@v1 /models/[email protected]_5mC_5hmC@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v4.3.0_6mA@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_6mA@v2 /models/[email protected]_6mA@v2
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v5.0.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_4mC_5mC@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_4mC_5mC@v1 /models/[email protected]_4mC_5mC@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mCG_5hmCG@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v1 /models/[email protected]_5mCG_5hmCG@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_5mC_5hmC@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mC_5hmC@v1 /models/[email protected]_5mC_5hmC@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_hac@v5.0.0_6mA@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_6mA@v1 /models/[email protected]_6mA@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v4.1.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v4.1.0_5mCG_5hmCG@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v2 /models/[email protected]_5mCG_5hmCG@v2
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v4.3.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mCG_5hmCG@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v1 /models/[email protected]_5mCG_5hmCG@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_5mC_5hmC@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mC_5hmC@v1 /models/[email protected]_5mC_5hmC@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v4.3.0_6mA@v2 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_6mA@v2 /models/[email protected]_6mA@v2
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v5.0.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_4mC_5mC@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_4mC_5mC@v1 /models/[email protected]_4mC_5mC@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mCG_5hmCG@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v1 /models/[email protected]_5mCG_5hmCG@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_5mC_5hmC@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mC_5hmC@v1 /models/[email protected]_5mC_5hmC@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_400bps_sup@v5.0.0_6mA@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_6mA@v1 /models/[email protected]_6mA@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_dna_r10.4.1_e8.2_5khz_stereo@v1.3 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
[email protected] 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
[email protected][email protected] 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected][email protected] /models/[email protected][email protected]
[email protected]_5mCG_5hmCG@v0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v0 /models/[email protected]_5mCG_5hmCG@v0
[email protected] 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
[email protected][email protected] 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected][email protected] /models/[email protected][email protected]
[email protected]_5mCG_5hmCG@v0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v0 /models/[email protected]_5mCG_5hmCG@v0
[email protected] 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
[email protected][email protected] 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected][email protected] /models/[email protected][email protected]
[email protected]_5mCG_5hmCG@v0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_5mCG_5hmCG@v0 /models/[email protected]_5mCG_5hmCG@v0
[email protected] 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna002_70bps_fast@v3 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna002_70bps_fast@v3 /models/rna002_70bps_fast@v3
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna002_70bps_hac@v3 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 rna002_70bps_hac@v3 /models/rna002_70bps_hac@v3
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_fast@v3.0.1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_fast@v5.0.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_hac@v3.0.1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_hac@v5.0.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_hac@v5.0.0_m6A@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_m6A@v1 /models/[email protected]_m6A@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_hac@v5.0.0_pseU@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_pseU@v1 /models/[email protected]_pseU@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_sup@v3.0.1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_sup@v3.0.1_m6A_DRACH@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_m6A_DRACH@v1 /models/[email protected]_m6A_DRACH@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_sup@v5.0.0 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected] /models/[email protected]
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_sup@v5.0.0_m6A@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_m6A@v1 /models/[email protected]_m6A@v1
1c65eb070a9fc1d88710c4dc09b06541f96fdd28_rna004_130bps_sup@v5.0.0_pseU@v1 1c65eb070a9fc1d88710c4dc09b06541f96fdd28 [email protected]_pseU@v1 /models/[email protected]_pseU@v1

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