Merge pull request #111 from ukhsa-collaboration/feature/prep-doc #4

	name: build-book

	# only run when specific files change
	# only run on install-fix-docs branch
	# TODO change this to dev/main branch once integrated

	on:
	push:
	branches:
	- master
	- dev

	jobs:
	build-book:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3

	- uses: actions/cache@v3
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
	restore-keys: \|
	${{ runner.os }}-pip-
	steps:

	- uses: actions/checkout@v3

	- name: Setup Graphviz
	uses: ts-graphviz/setup-graphviz@v1

	# install python
	- name: Set up Python 3.8
	uses: actions/setup-python@v4
	with:
	python-version: 3.8

	# install dependencies
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r requirements.txt
	pip install -r docs/requirements.txt

	# set up pygom
	- name: Build and install pygom
	run: \|
	python setup.py build
	python setup.py install

	# build the book
	# TODO check which flags are needed, -W
	- name: Build the book
	run: \|
	jupyter-book build --all -v docs/

	# deploy book to github-pages
	- name: GitHub Pages
	uses: peaceiris/[email protected]
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_dir: docs/_build/html

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