[py] ruff: misc manual fixes.

CMakePresets.json

@@ -213,6 +213,7 @@
         "OGS_INSTALL_DEPENDENCIES": "OFF",
         "OGS_USE_PIP": "OFF",
         "OGS_USE_MFRONT": "ON",
+        "DOGS_BUILD_PROCESSES": "SteadyStateDiffusion",
         "BUILD_SHARED_LIBS": "ON"
       }
     }

Tests/Python/test_simulator_mesh_interface.py

@@ -3,6 +3,7 @@
 import tempfile
 
 import numpy as np
+import ogs.mesh as mesh  # noqa: F401
 from ogs import simulator
 
 
@@ -120,9 +121,9 @@ def test_simulator():
         if len(read_back_bc_values) != len(bc_values_for_second_time_step):
             print(
                 "Python: error: data array size mismatch: got "
-                + str(len(new_bc_values))
+                + str(len(read_back_bc_values))
                 + ", expected "
-                + str(len(bc_values))
+                + str(len(bc_values_for_second_time_step))
             )
         comparison = read_back_bc_values == bc_values_for_second_time_step
         if not comparison.all():

scripts/snakemake/vtkdiff/wrapper.py

@@ -4,12 +4,14 @@
 __copyright__ = "Copyright 2020, OpenGeoSys Community"
 __license__ = "BSD"
 
-import os
+from pathlib import Path
 
 from snakemake.shell import shell
 
-if os.path.exists(snakemake.output[0]):
-    os.remove(snakemake.output[0])
+# ruff: noqa: F821
+output = Path(snakemake.output[0])
+if output.exists():
+    output.unlink()
 
 if snakemake.params.check_mesh:
     shell("vtkdiff {snakemake.input.a} {snakemake.input.b} -m > {snakemake.output[0]}")

scripts/test/cppcheck_gen_hashes.py

@@ -2,9 +2,10 @@
 import hashlib
 import json
 import sys
+from pathlib import Path
 
 data = None
-with open(sys.argv[1]) as json_file:
+with Path(sys.argv[1]).open() as json_file:
     data = json.load(json_file)
 
 for entry in data:
@@ -13,7 +14,7 @@
     hash = hashlib.sha256((desc + path).encode("utf-8")).hexdigest()
     entry["fingerprint"] = hash
 
-with open(sys.argv[1], "w") as outfile:
+with Path(sys.argv[1]).open("w") as outfile:
     json.dump(data, outfile)
 
 print(f"Added cppcheck fingerprints to {sys.argv[1]}.")

scripts/test/generate_coverage_vis_data.in.py

@@ -1,13 +1,14 @@
 #!/usr/bin/env python
 
 import os
+from pathlib import Path
 
 # need to increase OGS_CTEST_MAX_RUNTIME to enable these:
 # ctests = ["SurfaceComplexation", "EquilibriumPhase", "KineticReactant"]
 ctests = ["SteadyState", "ComponentTransport", "ThermoHydroMechanics"]
 report_path = "./coverage_reports"
 
-os.makedirs(report_path, exist_ok=True)
+Path(report_path).mkdir(parents=True, exist_ok=True)
 
 for t in ctests:
     os.system("cmake --build . -t clean_coverage")

web/content/docs/benchmarks/heatconduction/BHE_array_benchmark/bhe_array_analytical_solver.py

@@ -13,7 +13,7 @@
 Bayer, P., de Paly, M., & Beck, M. (2014).
 Strategic optimization of borehole heat exchanger field
 for seasonal geothermal heating and cooling.
-Applied Energy, 136, 445–453.
+Applied Energy, 136, 445-453.
 https://doi.org/10.1016/j.apenergy.2014.09.029
 
 Author: Shuang Chen