closes #27 - fix F2 detection in methods.config and updated CHANGELOG…

….md and nextflow.config (#32) Co-authored-by: Mootor <mmootor@ip-0A125235.rhxrlfvjyzbupc03cc22jkch3c.xx.internal.cloudapp.net>
uclahs-cds · Jun 30, 2022 · 4da6d8b · 4da6d8b
1 parent ca2f64b
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -8,6 +8,8 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 ---
 
 ## [Unreleased]
+### Changed
+- Fix F2 detection in Line 111 of methods.config
 
 ---
 
@@ -34,4 +36,4 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 - Add option to specify `map_qual`, `min_clique_size`, and `mad_cutoff` Delly filters to reduce the runtime.
 - Use BCFtools to automatically generate the samples.tsv that is needed by the sSV filtering (see https://github.com/dellytools/delly).
 
----
+---
diff --git a/pipeline/config/methods.config b/pipeline/config/methods.config
@@ -108,7 +108,7 @@ methods {
                 }
             else {
                 // Check memory for F series node
-                if (node_memory_GB >= (node_cpus * 2 * 0.9) && node_memory_GB <= (node_cpus * 2)) {
+                if (node_memory_GB >= (node_cpus * 2 * 0.9 - 1) && node_memory_GB <= (node_cpus * 2)) {
                     includeConfig "${projectDir}/config/F${node_cpus}.config"
                     }
                 else {

diff --git a/pipeline/nextflow.config b/pipeline/nextflow.config
@@ -5,7 +5,7 @@ manifest {
     name = "call-sSV"
     mainScript = "call-sSV.nf"
     nextflowVersion = ">=20.07.1"
-    author = "Yu Pan, Ghouse Mohammed"
+    author = "Yu Pan, Ghouse Mohammed, Mohammed Faizal Eeman Mootor"
     homePage = "https://github.com/uclahs-cds/pipeline-call-sSV"
     description = "A pipeline to call somatic SVs utilizing Delly"
     version = "2.0.0"