New annotations from opencravat

[SeriousHorncat]

Checklist before requesting a review

• I have performed a self-review of my code.
• My code follows the style guidelines enforced by static analysis tools.
• If it is a core feature, I have added thorough tests.
• My changes generate no new warnings.
• New and existing unit tests pass locally with my changes.
• Will this be part of a product update? If yes, please write one phrase about this update.

Pull Request Details

Wrike Ticket - Feature-Updated Annotations from OpenCravat

Changes made:

• Increased the delay for annotation not being ready, due to many more annotations being added and needing more time for tasks to be on the queue.
• Dataset that creates a version of the hgvs cdna variant that doesn't include the transcript version so that it can be used to query Ensembl's REST API for VEP
• New Linkout Datsets for GnomAD4 Variant, COSMIC
• Rendering REVEL and AlphaMissense for variants now
• Updated a row to render datasets horizontal if the associated class is included in the rendering configuration. Variant annotations were rendering vertically and it was taking too much space.

To Review:

• Static Analysis by Reviewer

• The changes made for the new annotations configured and that they are rendering and are working as intended/rendered correctly.

  To check this run the following commands:

  # From the project root
  docker compose down
  docker system prune -a --volumes
  
  docker compose up --build

  • Verify CPAM0002 has AlphaMissense annotations rendering (other variants don't have scores in the fixtures)
  • Import example analysis CILI_2_5K_ARMC9_L510V.json from etc/fixtures/import and verify the new annotations are rendering.

  

• All Github Actions checks have passed.

[fatimarabab]

CPAM0002 showing the new annotations!

Annotating the CILI case as well!

[fatimarabab]

Looks great!