Updated the importer to include the new ACMG expected fields along wi… #1165
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| name: Markdown, Docker, and Shell Static Analysis | |
| on: [push, pull_request, workflow_dispatch] | |
| env: | |
| MARKDOWNLINT_CONFIG: etc/static-analysis/markdownlint.json | |
| HADOLINT_DOCKER: hadolint/hadolint:v2.8.0 | |
| SHELLCHECK_DOCKER: koalaman/shellcheck:v0.9.0 | |
| MARKDOWN_DOCKER: ghcr.io/igorshubovych/markdownlint-cli:v0.32.2 | |
| jobs: | |
| docker-shell-markdown-static-analysis: | |
| runs-on: ubuntu-22.04 | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Pulling Docker containers | |
| run: | | |
| docker pull $HADOLINT_DOCKER | |
| docker pull $SHELLCHECK_DOCKER | |
| docker pull $MARKDOWN_DOCKER | |
| - name: Dockerfile linting with Hadolint | |
| run: | | |
| while read -r file; | |
| do | |
| docker run --rm -i $HADOLINT_DOCKER < "$file" | |
| done < <(find . -type f ! -path "*/node_modules/*" -name "Dockerfile" -print) | |
| - name: Shellscript linting with ShellCheck | |
| run: | | |
| while read -r file; | |
| do | |
| docker run --rm -v "$PWD:/mnt" $SHELLCHECK_DOCKER --format=gcc "$file" | |
| done < <(find . -type f ! -path "*node_modules/*" ! -path "*local/*" ! -path "*lib/*" ! -path "./.git/*" -name "*.sh" -print) | |
| - name: Markdown linting with markdownlint-cli | |
| run: | | |
| while read -r file; | |
| do | |
| docker run -v $PWD:/workdir $MARKDOWN_DOCKER -i paper.md --config $MARKDOWNLINT_CONFIG "$file" | |
| done < <(find . -type f ! -path "**/node_modules/*" ! -path "*local/*" ! -path "*lib/*" ! -path "**/.git/*" -name "*.md" -print) |