Updated the importer to include the new ACMG expected fields along wi… #1165
Workflow file for this run
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| name: Python CI | |
| on: [push, pull_request, workflow_dispatch] | |
| env: | |
| PYLINT_CONFIG: .pylintrc | |
| YAPF_CONFIG: .style.yapf | |
| ROSALUTION_KEY: not-a-real-key-but-need-to-resolve | |
| jobs: | |
| python-ci: | |
| runs-on: ubuntu-22.04 | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8"] | |
| defaults: | |
| run: | |
| working-directory: ./backend | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Lint with Pylint | |
| run: | | |
| # Stop the build if there are Python linting errors | |
| pylint --rcfile $PYLINT_CONFIG src tests | |
| - name: Formatting with Pylint | |
| run: | | |
| yapf -r . --diff --style $YAPF_CONFIG | |
| - name: Unit test with pytest | |
| run: | | |
| pytest --cov=src --cov-fail-under=80 --cov-branch --cov-report=term tests/unit/ | |
| - name: Integration test with pytest | |
| run: | | |
| pytest -s tests/integration |