migration script to add new fields for acmg information (#135) #1157

	name: Python CI

	on: [push, pull_request, workflow_dispatch]

	env:
	PYLINT_CONFIG: .pylintrc
	YAPF_CONFIG: .style.yapf
	ROSALUTION_KEY: not-a-real-key-but-need-to-resolve

	jobs:
	python-ci:

	runs-on: ubuntu-22.04
	if: github.event_name != 'pull_request' \|\| github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name

	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.8"]

	defaults:
	run:
	working-directory: ./backend

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	cache: 'pip'
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	- name: Lint with Pylint
	run: \|
	# Stop the build if there are Python linting errors
	pylint --rcfile $PYLINT_CONFIG src tests
	- name: Formatting with Pylint
	run: \|
	yapf -r . --diff --style $YAPF_CONFIG
	- name: Unit test with pytest
	run: \|
	pytest --cov=src --cov-fail-under=80 --cov-branch --cov-report=term tests/unit/
	- name: Integration test with pytest
	run: \|
	pytest -s tests/integration

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