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Dev/nick

Dev/nick #670

name: release-render-pipeline
on:
pull_request:
types:
- closed
branches:
- main
jobs:
release-render:
runs-on: ubuntu-latest
steps:
- name: Checkout Repository
uses: actions/checkout@v4
with:
ssh-key: ${{ secrets.RENDER_KEY }}
- name: Set up SSH for Git
run: |
mkdir -p ~/.ssh
echo "${{ secrets.RENDER_KEY }}" > ~/.ssh/id_rsa
chmod 600 ~/.ssh/id_rsa
ssh-keyscan github.com >> ~/.ssh/known_hosts
eval "$(ssh-agent -s)"
ssh-add ~/.ssh/id_rsa
# --- Step 1: Parse and Copy Files to Release Folder ---
- name: Parse File List from release/README.qmd
id: parse
run: |
# Extract the table section and parse the file paths
raw_file_list=$(awk '/\| name/ {f=1; next} /\|----/ {next} f && /\|/ {print $2}' software/release/README.qmd | tr -d ' ')
# Add the software/ prefix to each file path
echo "$raw_file_list" | sed 's/^/software\//' > file_list.txt
# Debugging output
echo "Files to monitor:"
cat file_list.txt
- name: Copy Files to Release Folder
run: |
mkdir -p software/release # Ensure the release folder exists
while read file; do
# Skip the config.py file
if [[ "$(basename $file)" == "config.py" ]]; then
echo "Skipping config.py"
continue
fi
# Copy the file, overwriting if it already exists
cp "$file" software/release/ # Overwrite files directly to the root of the release folder
done < file_list.txt
- name: List Files in Release Folder
run: |
echo "Files copied to the release folder:"
find software/release -type f
# --- Step 2: Update Version in Config.py ---
- name: Update Version in Config.py
run: |
# Get the list of changed (staged) files using git diff
changed_files=$(git diff --name-only)
# Get the list of untracked files (new files that haven't been added yet)
new_files=$(git ls-files --others --exclude-standard)
# Combine the changed and new files
all_changed_files=$(echo "$changed_files $new_files" | tr ' ' '\n')
# Process each file in file_list.txt
while read file; do
# Extract the base file name from the full path
base_file=$(basename "$file")
# Check if the file has been modified (either staged or new file)
if echo "$all_changed_files" | grep -q "$base_file"; then
# Check if the file exists in the config.py
if grep -q "$base_file" software/release/config.py; then
# Get the current version number using sed
current_version=$(sed -n "s/^.*'$base_file': \([0-9]*\),.*$/\1/p" software/release/config.py)
# Increment the version number by 1
new_version=$((current_version + 1))
# Update the version using sed
sed -i "s/^.*'$base_file': $current_version,.*$/'$base_file': $new_version,/g" software/release/config.py
# Debugging: Print the file name and updated version
echo "Updated $base_file version from $current_version to $new_version"
else
# Add the file with version 1 if it's not already in the dictionary
sed -i "/^version = {/a \ \ \ \ '$base_file': 1," software/release/config.py
# Debugging: Print that the file was added with version 1
echo "Added $base_file with version 1"
fi
else
# Debugging: Print that the file has not changed
echo "No change detected for $base_file"
fi
done < file_list.txt
# --- Step 3: Render README.qmd to Markdown ---
- name: Set up R
uses: r-lib/actions/setup-r@v2
- name: Install Required R Packages
run: |
Rscript -e 'if (!requireNamespace("rmarkdown", quietly = TRUE)) install.packages("rmarkdown", repos = "https://cloud.r-project.org/")'
Rscript -e 'if (!requireNamespace("knitr", quietly = TRUE)) install.packages("knitr", repos = "https://cloud.r-project.org/")'
- name: Set up Quarto
uses: quarto-dev/quarto-actions/setup@v2
- name: Find and Render README.qmd Files
run: |
find . -name "README.qmd" | while read qmd_file; do
quarto render "$qmd_file" --to gfm
done
# --- Step 4: Commit and Push All Changes Once ---
- name: Commit and Push All Changes
run: |
# Configure Git
git config user.name "github-actions[bot]"
git config user.email "github-actions[bot]@users.noreply.github.com"
# Check if there are changes to commit (release folder or rendered README files)
git diff --exit-code || (git add software/release/ && git add . && git commit -m "Release and Render")
# Push the changes if there were any
git push origin main || echo "No changes to push"
- name: Set up Pull Request from main to original branch
env:
GH_TOKEN: ${{ github.token }}
run: |
# Get the original branch from the pull request
original_branch=$(echo "${{ github.event.pull_request.head.ref }}")
# Create a pull request from main to the original branch
gh pr create --base "$original_branch" --head "main" --title "Sync main with $original_branch" --body "Automated sync from main branch" --fill || echo "Pull request already exists or failed"