Merge pull request #12 from tuftsceeo/main #6

	name: Render QMD Files

	on:
	push:
	branches:
	- dev/nick # Adjust as needed

	jobs:
	render_qmd:
	runs-on: ubuntu-latest

	steps:
	- name: Check out the repository
	uses: actions/checkout@v2

	- name: Install Quarto
	run: \|
	wget https://github.com/quarto-dev/quarto-cli/releases/download/v1.2.269/quarto-1.2.269-linux-amd64.deb
	sudo dpkg -i quarto-1.2.269-linux-amd64.deb

	- name: Install R and Required Packages
	run: \|
	sudo apt-get update
	sudo apt-get install -y r-base
	mkdir -p ~/R/library # Ensure the writable library path exists
	Rscript -e 'install.packages("rmarkdown", lib="~/R/library", repos="https://cloud.r-project.org")'
	Rscript -e 'install.packages("jsonlite", lib="~/R/library", repos="https://cloud.r-project.org")'

	- name: Render README.qmd files to README.md
	env:
	R_LIBS_USER: ~/R/library # Ensure Quarto sees the correct library path
	run: \|
	for file in $(find . -name 'README.qmd'); do
	# Render each README.qmd to README.md
	quarto render "$file" --to markdown
	done

	- name: Commit and Push changes
	run: \|
	git config --local user.email "[email protected]"
	git config --local user.name "GitHub Action"
	git add **/README.md
	git commit -m "Render README.qmd files to README.md"
	git push
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

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