Fix init_qc_report_wf connections when linc-qc and abcc-qc are disabl…

…ed (PennLINC#1314)

.vscode/settings.json

@@ -7,4 +7,8 @@
         "editor.rulers": [99]
     },
     "python.analysis.typeCheckingMode": "off",
+    "ruff.configuration": "pyproject.toml",
+    "ruff.lineLength": 99,
+    "editor.defaultFormatter": "charliermarsh.ruff",
+    "flake8.enabled": false,
 }

xcp_d/workflows/bold/plotting.py

@@ -439,6 +439,12 @@ def init_qc_report_wf(
             (make_qc_plots_es, ds_report_postproc_qc_es, [('after_process', 'in_file')]),
         ])  # fmt:skip
 
+    if config.workflow.file_format != 'nifti' and not (
+        config.workflow.linc_qc or config.workflow.abcc_qc
+    ):
+        # Need to explicitly add the inputnode to the workflow, since it's not set otherwise.
+        workflow.add_nodes([inputnode])
+
     return workflow