Test bot PR172 with current EESSI pilot (2021.12)

.github/workflows/test_eessi.yml

@@ -40,4 +40,33 @@ jobs:
               export EESSI_OS_TYPE=linux
               export EESSI_SOFTWARE_SUBDIR=${{matrix.EESSI_SOFTWARE_SUBDIR}}
               env | grep ^EESSI | sort
+              echo "just run check_missing_installations.sh (should use eessi-${{matrix.EESSI_VERSION}}.yml)"
               ./check_missing_installations.sh
+
+        - name: Test check_missing_installations.sh with missing package (GCC/8.3.0)
+          run: |
+              source /cvmfs/pilot.eessi-hpc.org/versions/${{matrix.EESSI_VERSION}}/init/bash
+              module load EasyBuild
+              eb --version
+              export EESSI_PREFIX=/cvmfs/pilot.eessi-hpc.org/versions/${{matrix.EESSI_VERSION}}
+              export EESSI_OS_TYPE=linux
+              export EESSI_SOFTWARE_SUBDIR=${{matrix.EESSI_SOFTWARE_SUBDIR}}
+              env | grep ^EESSI | sort
+              echo "modify eessi-${{matrix.EESSI_VERSION}}.yml by adding a missing package (GCC/8.3.0)"
+              echo "  GCC:" >> eessi-${{matrix.EESSI_VERSION}}.yml
+              echo "    toolchains:" >> eessi-${{matrix.EESSI_VERSION}}.yml
+              echo "      SYSTEM:" >> eessi-${{matrix.EESSI_VERSION}}.yml
+              echo "        versions: '8.3.0'" >> eessi-${{matrix.EESSI_VERSION}}.yml
+              tail -n 4 eessi-${{matrix.EESSI_VERSION}}.yml
+              # note, check_missing_installations.sh exits 1 if a package was
+              # missing, which is intepreted as false (exit code based, not
+              # boolean logic), hence when the script exits 0 if no package was
+              # missing it is interpreted as true, thus the test did not capture
+              # the missing package
+              if ./check_missing_installations.sh; then
+                echo "did NOT capture missing package; test FAILED"
+                exit 1
+              else
+                echo "captured missing package; test PASSED"
+                exit 0
+              fi

EESSI-pilot-install-software.sh

@@ -6,6 +6,8 @@
 #   https://wiki.bash-hackers.org/scripting/posparams#using_a_while_loop
 #   https://stackoverflow.com/questions/192249/how-do-i-parse-command-line-arguments-in-bash
 
+echo "test run for bot PR 172"
+
 display_help() {
   echo "usage: $0 [OPTIONS]"
   echo "  -g | --generic         -  instructs script to build for generic architecture target"
@@ -165,10 +167,6 @@ else
     eb --install-latest-eb-release &> ${eb_install_out}
     check_exit_code $? "${ok_msg}" "${fail_msg}"
 
-    # restore origin $PATH and $PYTHONPATH values
-    export PATH=${ORIG_PATH}
-    export PYTHONPATH=${ORIG_PYTHONPATH}
-
     eb --search EasyBuild-${REQ_EB_VERSION}.eb | grep EasyBuild-${REQ_EB_VERSION}.eb > /dev/null
     if [[ $? -eq 0 ]]; then
         ok_msg="EasyBuild v${REQ_EB_VERSION} installed, alright!"
@@ -177,6 +175,10 @@ else
         check_exit_code $? "${ok_msg}" "${fail_msg}"
     fi
 
+    # restore origin $PATH and $PYTHONPATH values
+    export PATH=${ORIG_PATH}
+    export PYTHONPATH=${ORIG_PYTHONPATH}
+
     module avail easybuild/${REQ_EB_VERSION} &> ${ml_av_easybuild_out}
     if [[ $? -eq 0 ]]; then
         echo_green ">> EasyBuild module installed!"

bot/bot-eessi-aws-citc.cfg

@@ -0,0 +1,151 @@
+# Also see documentation at https://github.com/EESSI/eessi-bot-software-layer/blob/main/README.md#step5.5
+
+[github]
+# replace '123456' with the ID of your GitHub App
+app_id = 281041
+
+# a short (!) name for your app instance that can be used for example
+#   when adding/updating a comment to a PR
+# (!) a short yet descriptive name is preferred because it appears in
+#   comments to the PR
+# for example, the name could include the name of the cluster the bot
+#   runs on and the username which runs the bot
+# NOTE avoid putting an actual username here as it will be visible on
+#      potentially publicly accessible GitHub pages.
+app_name = eessi-bot-citc-aws
+
+# replace '12345678' with the ID of the installation of your GitHub App
+#   (can be derived by creating an event and then checking for the list
+#   of sent events and its payload either via the Smee channel's web page
+#   or via the Advanced section of your GitHub App on github.com)
+installation_id = 33078935
+
+# path to the private key that was generated when the GitHub App was registered
+private_key = /mnt/shared/home/bot/eessi-bot-software-layer/eessi-bot-citc-aws-private-key.pem
+
+
+[buildenv]
+# name of the job script used for building an EESSI stack
+build_job_script = /mnt/shared/home/bot/eessi-bot-software-layer/scripts/bot-build.slurm
+
+# The container_cachedir may be used to reuse downloaded container image files
+# across jobs. Thus, jobs can more quickly launch containers.
+container_cachedir = /mnt/shared/home/bot/eessi-bot-software-layer/containers-cache-dir
+
+# it may happen that we need to customize some CVMFS configuration
+#   the value of cvmfs_customizations is a dictionary which maps a file
+#   name to an entry that needs to be added to that file
+cvmfs_customizations = {}
+
+# if compute nodes have no internet connection, we need to set http(s)_proxy
+#   or commands such as pip3 cannot download software from package repositories
+#   for example, the temporary EasyBuild is installed via pip3 first
+# http_proxy = http://PROXY_DNS:3128/
+# https_proxy = http://PROXY_DNS:3128/
+
+# directory under which the bot prepares directories per job
+#   structure created is as follows: YYYY.MM/pr_PR_NUMBER/event_EVENT_ID/run_RUN_NUMBER/OS+SUBDIR
+jobs_base_dir = /mnt/shared/home/bot/eessi-bot-software-layer/jobs
+
+# configure environment
+#   list of comma-separated modules to be loaded by build_job_script
+#   useful/needed if some tool is not provided as system-wide package
+#   (read by bot and handed over to build_job_script via parameter
+#   --load-modules)
+load_modules =
+
+# PATH to temporary directory on build node ... ends up being used for
+#     for example, EESSI_TMPDIR --> /tmp/$USER/EESSI
+#   escaping variables with '\' delays expansion to the start of the
+#     build_job_script; this can be used for referencing environment
+#     variables that are only set inside a Slurm job
+local_tmp = /tmp/$USER/EESSI
+
+# parameters to be added to all job submissions
+# NOTE do not quote parameter string. Quotes are retained when reading in config and
+#      then the whole 'string' is recognised as a single parameter.
+# NOTE 2 '--get-user-env' may be needed on systems where the job's environment needs
+#        to be initialised as if it is for a login shell.
+# note: hardcoded 24h time limit until https://github.com/EESSI/eessi-bot-software-layer/issues/146 is fixed
+slurm_params = --hold --time=24:0:0
+
+# full path to the job submission command
+submit_command = /usr/bin/sbatch
+
+# which GH account has the permission to trigger the build (by setting
+# the label 'bot:build' (apparently this cannot be restricted on GitHub)
+# if value is left/empty everyone can trigger the build
+# value can be a space delimited list of GH accounts
+build_permission = boegel trz42 bedroge
+
+[architecturetargets]
+# defines both for which architectures the bot will build
+#   and what submission parameters shall be used
+# medium instances (8 cores, 16GB RAM)
+#arch_target_map = { "linux/x86_64/generic" : "--constraint shape=c4.4xlarge", "linux/x86_64/intel/haswell" : "--constraint shape=c4.4xlarge", "linux/x86_64/intel/skylake_avx512" : "--constraint shape=c5.4xlarge", "linux/x86_64/amd/zen2": "--constraint shape=c5a.4xlarge", "linux/x86_64/amd/zen3" : "--constraint shape=c6a.4xlarge", "linux/aarch64/generic" : "--constraint shape=c6g.4xlarge", "linux/aarch64/graviton2" : "--constraint shape=c6g.4xlarge", "linux/aarch64/graviton3" : "--constraint shape=c7g.4xlarge"}
+# larger instances (16 cores, 32GB RAM)
+arch_target_map = { "linux/x86_64/generic" : "--constraint shape=c4.4xlarge", "linux/x86_64/intel/haswell" : "--constraint shape=c4.4xlarge", "linux/x86_64/intel/skylake_avx512" : "--constraint shape=c5.4xlarge", "linux/x86_64/amd/zen2": "--constraint shape=c5a.4xlarge", "linux/x86_64/amd/zen3" : "--constraint shape=c6a.4xlarge", "linux/aarch64/generic" : "--constraint shape=c6g.4xlarge", "linux/aarch64/graviton2" : "--constraint shape=c6g.4xlarge", "linux/aarch64/graviton3" : "--constraint shape=c7g.4xlarge"}
+
+[repo_targets]
+# defines for which repository a arch_target should be build for
+#
+# only building for repository EESSI-pilot
+repo_target_map = { "linux/x86_64/generic" : ["EESSI-pilot"], "linux/x86_64/intel/haswell" : ["EESSI-pilot"], "linux/x86_64/intel/skylake_avx512" : ["EESSI-pilot"], "linux/x86_64/amd/zen2": ["EESSI-pilot"], "linux/x86_64/amd/zen3" : ["EESSI-pilot"], "linux/aarch64/generic" : ["EESSI-pilot"], "linux/aarch64/graviton2" : ["EESSI-pilot"], "linux/aarch64/graviton3" : ["EESSI-pilot"]}
+
+# points to definition of repositories (default EESSI-pilot defined by build container)
+repos_cfg_dir = /mnt/shared/home/bot/eessi-bot-software-layer/cfg-bundles
+
+# configuration for event handler which receives events from a GitHub repository.
+[event_handler]
+# path to the log file to log messages for event handler
+log_path = /mnt/shared/home/bot/eessi-bot-software-layer/eessi_bot_event_handler.log
+
+
+[job_manager]
+# path to the log file to log messages for job manager
+log_path = /mnt/shared/home/bot/eessi-bot-software-layer/eessi_bot_job_manager.log
+
+# directory where job manager stores information about jobs to be tracked
+#   e.g. as symbolic link JOBID -> directory to job
+job_ids_dir = /mnt/shared/home/bot/eessi-bot-software-layer/jobs
+
+# full path to the job status checking command
+poll_command = /usr/bin/squeue
+
+# polling interval in seconds
+poll_interval = 60
+
+# full path to the command for manipulating existing jobs
+scontrol_command = /usr/bin/scontrol
+
+[deploycfg]
+# script for uploading built software packages
+tarball_upload_script = /mnt/shared/home/bot/eessi-bot-software-layer/scripts/eessi-upload-to-staging
+
+# URL to S3/minio bucket
+#   if attribute is set, bucket_base will be constructed as follows
+#     bucket_base=${endpoint_url}/${bucket_name}
+#   otherwise, bucket_base will be constructed as follows
+#     bucket_base=https://${bucket_name}.s3.amazonaws.com
+# - The former variant is used for non AWS S3 services, eg, minio, or when
+#   the bucket name is not provided in the hostname (see latter case).
+# - The latter variant is used for AWS S3 services.
+#endpoint_url = URL_TO_S3_SERVER
+
+# bucket name
+bucket_name = eessi-staging
+
+# upload policy: defines what policy is used for uploading built artefacts
+#                to an S3 bucket
+# 'all' ..: upload all artefacts (mulitple uploads of the same artefact possible)
+# 'latest': for each build target (eessi-VERSION-{software,init,compat}-OS-ARCH)
+#           only upload the latest built artefact
+# 'once'  : only once upload any built artefact for the build target
+# 'none'  : do not upload any built artefacts
+upload_policy = once
+
+# which GH account has the permission to trigger the deployment (by setting
+# the label 'bot:deploy' (apparently this cannot be restricted on GitHub)
+# if value is left/empty everyone can trigger the deployment
+# value can be a space delimited list of GH accounts
+deploy_permission = boegel trz42 bedroge