Skip to content

minor polishing

minor polishing #4

# documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions
name: Check for missing software installations in pilot.nessi.no
on: [push, pull_request, workflow_dispatch]
permissions:
contents: read # to fetch code (actions/checkout)
jobs:
check_missing:
runs-on: ubuntu-22.04
strategy:
fail-fast: false
matrix:
EESSI_VERSION:
- 2023.06
EESSI_SOFTWARE_SUBDIR_OVERRIDE:
# - aarch64/generic
- x86_64/amd/zen2
- x86_64/intel/broadwell
- x86_64/intel/skylake_avx512
- x86_64/generic
steps:
- name: Check out software-layer repository
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # v3.1.0
- name: Mount NESSI CernVM-FS repository
uses: cvmfs-contrib/github-action-cvmfs@d4641d0d591c9a5c3be23835ced2fb648b44c04b # v3.1
with:
cvmfs_config_package: https://github.com/NorESSI/filesystem-layer/releases/download/latest/cvmfs-config-nessi_latest_all.deb
cvmfs_http_proxy: DIRECT
cvmfs_repositories: pilot.nessi.no
- name: Test check_missing_installations.sh script
run: |
export EESSI_SOFTWARE_SUBDIR_OVERRIDE=${{matrix.EESSI_SOFTWARE_SUBDIR_OVERRIDE}}
source /cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}}/init/bash
# set $EESSI_CPU_FAMILY to the CPU architecture that corresponds to $EESSI_SOFTWARE_SUBDIR_OVERRIDE (part before the first slash),
# to prevent issues with checks in the Easybuild configuration that use this variable
export EESSI_CPU_FAMILY=${EESSI_SOFTWARE_SUBDIR_OVERRIDE%%/*}
module load EasyBuild
which eb
eb --version
export EESSI_PREFIX=/cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}}
export EESSI_OS_TYPE=linux
env | grep ^EESSI | sort
echo "just run check_missing_installations.sh (should use easystacks/pilot.nessi.no/${{matrix.EESSI_VERSION}}/eessi-${{matrix.EESSI_VERSION}}-*.yml)"
for easystack_file in $(ls easystacks/pilot.nessi.no/${{matrix.EESSI_VERSION}}/eessi-${{matrix.EESSI_VERSION}}-eb-*.yml); do
echo "check missing installations for ${easystack_file}..."
./check_missing_installations.sh ${easystack_file}
ec=$?
if [[ ${ec} -ne 0 ]]; then echo "missing installations found for ${easystack_file}!" >&2; exit ${ec}; fi
done
- name: Test check_missing_installations.sh with missing package (GCC/8.3.0)
run: |
export EESSI_SOFTWARE_SUBDIR_OVERRIDE=${{matrix.EESSI_SOFTWARE_SUBDIR_OVERRIDE}}
source /cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}}/init/bash
# set $EESSI_CPU_FAMILY to the CPU architecture that corresponds to $EESSI_SOFTWARE_SUBDIR_OVERRIDE (part before the first slash),
# to prevent issues with checks in the Easybuild configuration that use this variable
export EESSI_CPU_FAMILY=${EESSI_SOFTWARE_SUBDIR_OVERRIDE%%/*}
module load EasyBuild
which eb
eb --version
export EESSI_PREFIX=/cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}}
export EESSI_OS_TYPE=linux
env | grep ^EESSI | sort
# create dummy easystack file with a single entry (something that is not installed in EESSI)
easystack_file="test.yml"
echo "easyconfigs:" > ${easystack_file}
echo " - GCC-8.3.0:" >> ${easystack_file}
echo "created easystack file '${easystack_file}' with a missing installation (GCC/8.3.0):"
cat ${easystack_file}
# note, check_missing_installations.sh exits 1 if a package was
# missing, which is intepreted as false (exit code based, not
# boolean logic), hence when the script exits 0 if no package was
# missing it is interpreted as true, thus the test did not capture
# the missing package
if ./check_missing_installations.sh ${easystack_file}; then
echo "did NOT capture missing package; test FAILED"
exit 1
else
echo "captured missing package; test PASSED"
exit 0
fi