fix undefined variable + add action to update PR description #5
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# documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions | |
name: Analysis of a pull request | |
on: [push, pull_request, workflow_dispatch] | |
permissions: | |
contents: read # to fetch code (actions/checkout) | |
jobs: | |
pilot: | |
runs-on: ubuntu-20.04 | |
strategy: | |
fail-fast: false | |
matrix: | |
EESSI_VERSION: | |
- 2023.06 | |
EESSI_SOFTWARE_SUBDIR: | |
- x86_64/generic | |
# - aarch64/generic | |
# - x86_64/amd/zen2 | |
# - x86_64/intel/broadwell | |
# - x86_64/intel/cascadelake | |
# - x86_64/intel/skylake_avx512 | |
EASYSTACK_FILE: | |
# - eessi-2023.06-eb-4.7.2-2021a.yml | |
# - eessi-2023.06-eb-4.7.2-2021b.yml | |
# - eessi-2023.06-eb-4.7.2-2022a.yml | |
# - eessi-2023.06-eb-4.7.2-2022b.yml | |
# - eessi-2023.06-eb-4.7.2-system.yml | |
# - eessi-2023.06-eb-4.8.0-system.yml | |
- eessi-2023.06-eb-4.8.1-2022a.yml | |
# - eessi-2023.06-eb-4.8.1-system.yml | |
python: [3.7] # ScanCode-Toolkit requires Python 3.7 or newer | |
steps: | |
- name: Install dependencies for ScanCode-Toolkit | |
run: | | |
sudo apt install python-dev bzip2 xz-utils zlib1g libxml2-dev libxslt1-dev libpopt0 | |
- name: set up Python | |
uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984 # v4.3.0 | |
with: | |
python-version: ${{matrix.python}} | |
architecture: x64 | |
- name: upgrade base tools | |
run: | | |
pip install --user --upgrade pip setuptools wheel | |
- name: Install ScanCode-Toolkit | |
run: | | |
pip install --user scancode-toolkit | |
- name: Check out software-layer repository | |
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # v3.1.0 | |
- name: Mount EESSI CernVM-FS pilot repository | |
uses: cvmfs-contrib/github-action-cvmfs@d4641d0d591c9a5c3be23835ced2fb648b44c04b # v3.1 | |
with: | |
cvmfs_config_package: https://github.com/NorESSI/filesystem-layer/releases/download/latest/cvmfs-config-nessi_latest_all.deb | |
cvmfs_http_proxy: DIRECT | |
cvmfs_repositories: pilot.nessi.no | |
- name: Determine missing installations | |
if: '!cancelled()' | |
run: | | |
export EESSI_SOFTWARE_SUBDIR_OVERRIDE=${{matrix.EESSI_SOFTWARE_SUBDIR}} | |
source /cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}}/init/bash | |
module load EasyBuild | |
eb --version | |
export EESSI_PREFIX=/cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}} | |
export EESSI_OS_TYPE=linux | |
env | grep ^EESSI | sort | |
source configure_easybuild | |
EB_MISSING_OUT=eb_missing.out | |
eb --missing --easystack ${{matrix.EASYSTACK_FILE}} > ${EB_MISSING_OUT} | |
grep '.* out of .* required modules missing:' ${EB_MISSING_OUT} | |
exit_code=$? | |
if [[ ${exit_code} -eq 0 ]]; then | |
# there may be multiple sections with the above search string | |
# we grab all lines listing missing modules and print a list of | |
# unique modules only | |
MISSING_MODULES=$(grep '^* ' ${EB_MISSING_OUT} | sort -u) | |
echo "found $(echo ${MISSING_MODULES} | wc -l) modules missing:" | |
echo "${MISSING_MODULES}" | |
else | |
echo "no modules missing" | |
fi | |
- name: Update PR description | |
uses: nefrob/pr-description@eb00e54af678cf0d50a5b8fdd54b557c9cd8ddc5 | |
with: | |
content: "Hello there!" | |
regex: "matchuntilthenend.*" | |
regexFlags: i | |
token: ${{ secrets.GITHUB_TOKEN }} |