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fix undefined variable + add action to update PR description #5

fix undefined variable + add action to update PR description

fix undefined variable + add action to update PR description #5

Workflow file for this run

# documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions
name: Analysis of a pull request
on: [push, pull_request, workflow_dispatch]
permissions:
contents: read # to fetch code (actions/checkout)
jobs:
pilot:
runs-on: ubuntu-20.04
strategy:
fail-fast: false
matrix:
EESSI_VERSION:
- 2023.06
EESSI_SOFTWARE_SUBDIR:
- x86_64/generic
# - aarch64/generic
# - x86_64/amd/zen2
# - x86_64/intel/broadwell
# - x86_64/intel/cascadelake
# - x86_64/intel/skylake_avx512
EASYSTACK_FILE:
# - eessi-2023.06-eb-4.7.2-2021a.yml
# - eessi-2023.06-eb-4.7.2-2021b.yml
# - eessi-2023.06-eb-4.7.2-2022a.yml
# - eessi-2023.06-eb-4.7.2-2022b.yml
# - eessi-2023.06-eb-4.7.2-system.yml
# - eessi-2023.06-eb-4.8.0-system.yml
- eessi-2023.06-eb-4.8.1-2022a.yml
# - eessi-2023.06-eb-4.8.1-system.yml
python: [3.7] # ScanCode-Toolkit requires Python 3.7 or newer
steps:
- name: Install dependencies for ScanCode-Toolkit
run: |
sudo apt install python-dev bzip2 xz-utils zlib1g libxml2-dev libxslt1-dev libpopt0
- name: set up Python
uses: actions/setup-python@13ae5bb136fac2878aff31522b9efb785519f984 # v4.3.0
with:
python-version: ${{matrix.python}}
architecture: x64
- name: upgrade base tools
run: |
pip install --user --upgrade pip setuptools wheel
- name: Install ScanCode-Toolkit
run: |
pip install --user scancode-toolkit
- name: Check out software-layer repository
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # v3.1.0
- name: Mount EESSI CernVM-FS pilot repository
uses: cvmfs-contrib/github-action-cvmfs@d4641d0d591c9a5c3be23835ced2fb648b44c04b # v3.1
with:
cvmfs_config_package: https://github.com/NorESSI/filesystem-layer/releases/download/latest/cvmfs-config-nessi_latest_all.deb
cvmfs_http_proxy: DIRECT
cvmfs_repositories: pilot.nessi.no
- name: Determine missing installations
if: '!cancelled()'
run: |
export EESSI_SOFTWARE_SUBDIR_OVERRIDE=${{matrix.EESSI_SOFTWARE_SUBDIR}}
source /cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}}/init/bash
module load EasyBuild
eb --version
export EESSI_PREFIX=/cvmfs/pilot.nessi.no/versions/${{matrix.EESSI_VERSION}}
export EESSI_OS_TYPE=linux
env | grep ^EESSI | sort
source configure_easybuild
EB_MISSING_OUT=eb_missing.out
eb --missing --easystack ${{matrix.EASYSTACK_FILE}} > ${EB_MISSING_OUT}
grep '.* out of .* required modules missing:' ${EB_MISSING_OUT}
exit_code=$?
if [[ ${exit_code} -eq 0 ]]; then
# there may be multiple sections with the above search string
# we grab all lines listing missing modules and print a list of
# unique modules only
MISSING_MODULES=$(grep '^* ' ${EB_MISSING_OUT} | sort -u)
echo "found $(echo ${MISSING_MODULES} | wc -l) modules missing:"
echo "${MISSING_MODULES}"
else
echo "no modules missing"
fi
- name: Update PR description
uses: nefrob/pr-description@eb00e54af678cf0d50a5b8fdd54b557c9cd8ddc5
with:
content: "Hello there!"
regex: "matchuntilthenend.*"
regexFlags: i
token: ${{ secrets.GITHUB_TOKEN }}