Tripal 3 Support v7.x-3.0

Tripal Analysis Expression v7.x-3.0 is here! The module now supports Tripal 3. Support for Tripal 2 has been dropped: If you'd like to continue using Tripal 2 content types, please use our previous release.

The module has been split into three to facilitate code maintenance: Protocol, Biomaterial, and Analysis Expression. All three modules are included in this repo and will be installed when enabling Tripal Analysis Expression.

New Features

• Unit assignments attached to quantification and corresponding administrative page
• Biosample property CV support. Previously, all Biosamples properties were loaded into Chado under the Biosampleprop CV. Now, all biosample properties may be assigned to a CVterm at the data loading step.
• All properties are now passed around the module instead of a predefined set of biomaterialprop properties (ie tissue)
• Group biosamples by analysis in all visualizations.
• Improved feature expression viewer allows customizing grouping and color of plot by biosample property.

Tripal Entity Types and Fields Defined

Entity Types

• Arraydesign
• Protocol

Fields

• Efo__substrate
• Local__cvterm
• Local__protocol_type
• Obi__manufacturer
• Obi__microarray_platform
• Sep__biological sample
  • Attaches to organism as the biomaterial browser
• data__gene_expression
  • Attaches to analysis (allows download) and features (individual feature expression plotter).

Latest version with support for Tripal 2

Release Notes

Use this version if you intend to use this module with Tripal v2.

Fixes Issue With "chado.analysis" Table

Release Notes

• This releases fixes an issue regarding the following query SELECT analysis_id as id FROM chado.analysis

Initial Release

Release Notes

• Initial stable release