Heritability in plant breeding - R and SAS code examples
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Feb 27, 2021 - SAS
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heritability
Here are 25 public repositories matching this topic...
Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq
kidney diabetes single-cell-rna-seq heritability allele-specific single-cell-atac-seq single-cell-sequencing ckd
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May 18, 2023 - R
Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
gwas genetics linear-mixed-models epistasis variance-components heritability epistasis-analysis gwas-tools gwas-case-control
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Nov 29, 2022 - C++
Code and simulations using interaction-LD score regression
gwas epistasis heritability gwas-tools gwas-summary-statistics ld-score-regression heritability-estimation
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Jul 2, 2024 - Python
MultiVariate Polygenic Mixture Model
statistics genetics modeling bayesian-methods stan mixture-model ukbiobank heritability gwas-summary-statistics genetic-correlations
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Apr 4, 2020 - R
Topological Learning for Brain Networks (Annals of Applied Statistics; MICCAI 2021)
persistent-homology topological-data-analysis heritability permutation-test brain-networks wasserstein-distance birth-death-decomposition
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Sep 30, 2021 - C++
gwas workflow from raw intensity data to in-silico functional mapping
gwas plink imputation meta-analysis illumina phasing emmax heritability fine-mapping saige haplotype genotype-imputation plink2 gencall idat-to-vcf idat2vcf functional-gwas bolt-lmm
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Aug 21, 2024 - Shell
Regional Heritability Analysis is a software package for estimating regional heritability of small genomic segments.
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Sep 26, 2020 - Jupyter Notebook
A library for calculating penetrance tables of any bivariate epistasis model.
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Aug 31, 2020 - MATLAB
Pedigree Relatedness Summary Parameters R package
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Mar 24, 2016 - R
The project focused on the analysis of foxes from 3 different farms and the subsequent presentation of trait heritability results, genetic trends, breeding values and relationship matrix.
python blup data-visualisation r-package covariance-matrix heritability breeding-value genetic-trends
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Jan 31, 2023 - Jupyter Notebook
Highly Efficient Imaging Genetics (HEIG)
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Dec 12, 2024 - Python
BioTools is a repository that has many scripts which can be utilized to solve biological problems.
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Jul 16, 2021 - R
Developmental version of R package BayesTwin
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Sep 28, 2018 - R
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Apr 5, 2024 - Python
INSA Rennes 4EII cpp Labs
cplusplus cpp templates class string-manipulation memory-management constructor memory-allocation references pointers specialization agregation heritability
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Dec 30, 2017 - C
R package for wrangling and summarising 'animal' brms models
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Aug 18, 2020 - R
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