Fix integration environments #518
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| name: Build environments | |
| on: [push, pull_request] | |
| jobs: | |
| Build-environments: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| environments: | |
| [ | |
| "jupyter-book/introduction/analysis_tools.yml", | |
| "jupyter-book/preprocessing_visualization/preprocessing.yml", | |
| "jupyter-book/cellular_structure/clustering.yml", | |
| "jupyter-book/cellular_structure/annotation.yml", | |
| "jupyter-book/cellular_structure/integration.yml", | |
| "jupyter-book/conditions/compositional.yml", | |
| "jupyter-book/conditions/gsea_pathway.yml", | |
| "jupyter-book/conditions/perturbation_modeling.yml", | |
| "jupyter-book/conditions/differential_gene_expression.yml", | |
| "jupyter-book/trajectories/lineage_tracing.yml", | |
| "jupyter-book/trajectories/pseudotemporal.yml", | |
| "jupyter-book/mechanisms/cell_cell_communication.yml", | |
| "jupyter-book/spatial/spatial.yml", | |
| "jupyter-book/surface_protein/surface_protein.yml", | |
| "jupyter-book/multimodal_integration/paired_integration.yml", | |
| "jupyter-book/multimodal_integration/advanced_integration.yml", | |
| ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-downloads: true | |
| environment-file: ${{ matrix.environments }} | |
| environment-name: currentenv | |
| condarc: | | |
| channel_priority: disabled |