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Multivariate and regularized CoxPH models #744

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mhaist94 opened this issue Jun 1, 2024 · 0 comments
Open

Multivariate and regularized CoxPH models #744

mhaist94 opened this issue Jun 1, 2024 · 0 comments
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enhancement New feature or request

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@mhaist94
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mhaist94 commented Jun 1, 2024

Description of feature

Hi all,

thanks for taking your time digging through my requests:
Another important points (at least for clinicians, I will get to some more biology-focused features later) would be the implementation of multivariate CoxPH models that take into account multiple variables that might affect your time-to-event endpoint.
One of those (that is though limited in terms of the model fitting accuracy, and thus should not be employed with more than 5 variables at a time) is described in the SurvivalAnalysis (analyse_multivariate function, see https://cran.r-project.org/web/packages/survivalAnalysis/vignettes/multivariate.html) package in R or again in the survminer package in R (here its a coxph function if I recall correctly).
To fit more parameters into a multivariate model (which is rarely done), one usually employs regularized CoxPH models (for example LASSO regularized models, which is implmented in the glmnet package in R, see https://glmnet.stanford.edu/articles/glmnet.html). This is not a must-have - but given that the utility of ehrapy is particularly in the dissection of big heterogeneous datasets regularized models might be an idea worthwhile considering.

@mhaist94 mhaist94 added the enhancement New feature or request label Jun 1, 2024
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