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@kevinlibuit kevinlibuit released this 20 Apr 14:31
· 277 commits to main since this release
v1.4.0
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Learn about vigilant mode.

Minor Updates to Titan genomic characterization workflows (ONT, ClearLabs, Illumina PE/SE):

  • Titan Illumina SE workflow release
  • Pangolin tag updated to staphb/pangolin:2.3.8-pangolearn-2021-04-14
  • VADR version updated to staphb/vadr:1.2 (required some code modification in addition to Docker tag update)
    -- VADR Update added as single-module workflow
  • NCBI Srubber added to de-host SC2 read data (not included in Titan Illumina SE workflow as read data not compatible with this tool)
  • Add FastQC output to Titan ClearLabs and ONT workflows

*** Important note regarding this release ***
Users have reported, and we have since confirmed, that the inclusion of the NCBI Scrubber tool (meant for removing human read data) in the Titan genomic characterization workflows was inadvertently impacting the quality of the downstream consensus SC2 assembly.

This module will be removed from the Titan workflows in a future release, but will be made available as a single-task workflow for those submitting to SRA.

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