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v1.1.0
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@kevinlibuit kevinlibuit released this 15 Mar 16:11
· 374 commits to main since this release
v1.1.0
bdfed73

New workflows:

  • Titan_Augur_Prep: workflow to prepare SC2 sample metadata file for Augur analysis
  • Titan_Augur_Run: workflow for SC2 cluster investigations. Titan_Augur_Run will run Augur without a subsampling module using a modified version of the Braod's sarscov2_nextstrain WDL workflow to create an Auspice JSON file; output from the modified sarscov2_nextstrain workflow will also be used to infer SNP distances and create a static PDF report
  • Pangolin_Update: Run pangolin on samples with a specified docker image

Modified workflows:

  • Mercury Batch: must provide samplename array to enable output that describes which samples were batched and excluded for each repository (batched_samples.tsv and excluded_samples.tsv)
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