stdout array lengths

theiagen · Mar 2, 2021 · a643018 · a643018
1 parent 4eb5bdf
commit a643018
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/tasks/task_se_pub_repo_submission.wdl b/tasks/task_se_pub_repo_submission.wdl
@@ -218,7 +218,11 @@ task compile {
   vadr_array=(~{sep=' ' vadr_num_alerts})
   vadr_array_len=$(echo "${#vadr_array[@]}")
 
-  # Ensure assembly, meta, and vadr arrays are of equal length 
+  echo "Assembly array length: $assembly_array_len"
+  echo "Meta array length: $meta_array_len"
+  echo "VADR array length: $vadr_array_len"
+
+  # Ensure assembly, meta, and vadr arrays are of equal length
   if [ "$assembly_array_len" -ne "$meta_array_len" ]; then
     echo "Assembly array (length: $assembly_array_len) and metadata array (length: $meta_array_len) are of unequal length."
     exit 1