update nextstrain run issue

theiagen · Apr 1, 2021 · 12774d3 · 12774d3
1 parent 9aec072
commit 12774d3
Showing 1 changed file with 15 additions and 15 deletions.
diff --git a/tasks/tasks_nextstrain.wdl b/tasks/tasks_nextstrain.wdl
@@ -311,7 +311,7 @@ task nextstrain_build_subsample {
         File?    parameters_yaml
 
         Int?     machine_mem_gb
-        String   docker = "nextstrain/base:build-20210127T135203Z"
+        String   docker = "nextstrain/base:build-20210218T081251Z"
         String   nextstrain_ncov_repo_commit = "5dbca8a45a64e39057c22163f154db981f7ed5c1"
     }
     parameter_meta {
@@ -411,7 +411,7 @@ task nextstrain_build_subsample {
 task nextstrain_ncov_defaults {
     input {
         String   nextstrain_ncov_repo_commit = "5dbca8a45a64e39057c22163f154db981f7ed5c1"
-        String   docker = "nextstrain/base:build-20210127T135203Z"
+        String   docker = "nextstrain/base:build-20210218T081251Z"
     }
     command {
         set -e
@@ -460,7 +460,7 @@ task filter_subsample_sequences {
         Array[String]?  exclude_where
         Array[String]?  include_where
 
-        String   docker = "nextstrain/base:build-20210127T135203Z"
+        String   docker = "nextstrain/base:build-20210218T081251Z"
     }
     parameter_meta {
         sequences_fasta: {
@@ -600,7 +600,7 @@ task filter_sequences_to_list {
         File          sequences
         Array[File]?  keep_list
 
-        String   docker = "nextstrain/base:build-20210127T135203Z"
+        String   docker = "nextstrain/base:build-20210218T081251Z"
     }
     parameter_meta {
         sequences: {
@@ -774,7 +774,7 @@ task augur_mafft_align {
         Boolean  fill_gaps = true
         Boolean  remove_reference = true
 
-        String   docker = "nextstrain/base:build-20210127T135203Z"
+        String   docker = "nextstrain/base:build-20210218T081251Z"
     }
     command {
         set -e
@@ -841,7 +841,7 @@ task augur_mask_sites {
         File     sequences
         File?    mask_bed
 
-        String   docker = "nextstrain/base:build-20210127T135203Z"
+        String   docker = "nextstrain/base:build-20210218T081251Z"
     }
     parameter_meta {
         sequences: {
@@ -896,7 +896,7 @@ task draft_augur_tree {
         String?  tree_builder_args
 
         Int?     cpus
-        String   docker = "nextstrain/base:build-20210127T135203Z"
+        String   docker = "nextstrain/base:build-20210218T081251Z"
     }
     parameter_meta {
         msa_or_vcf: {
@@ -962,7 +962,7 @@ task refine_augur_tree {
         String?  divergence_units = "mutations"
         File?    vcf_reference
 
-        String   docker = "nextstrain/base:build-20210127T135203Z"
+        String   docker = "nextstrain/base:build-20210218T081251Z"
     }
     parameter_meta {
         msa_or_vcf: {
@@ -1031,7 +1031,7 @@ task ancestral_traits {
         File?          weights
         Float?         sampling_bias_correction
 
-        String   docker = "nextstrain/base:build-20210127T135203Z"
+        String   docker = "nextstrain/base:build-20210218T081251Z"
     }
     String out_basename = basename(tree, '.nwk')
     command {
@@ -1081,7 +1081,7 @@ task ancestral_tree {
         File?    vcf_reference
         File?    output_vcf
 
-        String   docker = "nextstrain/base:build-20210127T135203Z"
+        String   docker = "nextstrain/base:build-20210218T081251Z"
     }
     parameter_meta {
         msa_or_vcf: {
@@ -1139,7 +1139,7 @@ task translate_augur_tree {
         File?  vcf_reference_output
         File?  vcf_reference
 
-        String docker = "nextstrain/base:build-20210127T135203Z"
+        String docker = "nextstrain/base:build-20210218T081251Z"
     }
     String out_basename = basename(tree, '.nwk')
     command {
@@ -1192,7 +1192,7 @@ task tip_frequencies {
         Boolean  censored = false
         Boolean  include_internal_nodes = false
 
-        String   docker = "nextstrain/base:build-20210127T135203Z"
+        String   docker = "nextstrain/base:build-20210218T081251Z"
         String   out_basename = basename(tree, '.nwk')
     }
     command {
@@ -1249,7 +1249,7 @@ task assign_clades_to_nodes {
         File ref_fasta
         File clades_tsv
 
-        String docker = "nextstrain/base:build-20210127T135203Z"
+        String docker = "nextstrain/base:build-20210218T081251Z"
     }
     String out_basename = basename(basename(tree_nwk, ".nwk"), "_timetree")
     command {
@@ -1291,7 +1291,7 @@ task augur_import_beast {
         String? tip_date_delimiter
 
         Int?    machine_mem_gb
-        String  docker = "nextstrain/base:build-20210127T135203Z"
+        String  docker = "nextstrain/base:build-20210218T081251Z"
     }
     String tree_basename = basename(beast_mcc_tree, ".tree")
     command {
@@ -1348,7 +1348,7 @@ task export_auspice_json {
 
         String out_basename = basename(basename(tree, ".nwk"), "_timetree")
 
-        String docker = "nextstrain/base:build-20210127T135203Z"
+        String docker = "nextstrain/base:build-20210218T081251Z"
     }
 
     command {