Code

[TheiaEuk] TheiaEuk ONT Workflow#644

Code

Draft

Michal-Babins wants to merge 13 commits intomaintheiagen/public_health_bioinformatics:mainfrom mb-theiaeuk-ont-devtheiagen/public_health_bioinformatics:mb-theiaeuk-ont-devCopy head branch name to clipboard

+312-68

Commits

Commits on Oct 7, 2024

• Initial commit for TheiaEuk ONT

  Michal-Babins

  committed
  622be5e

• Add specifics for description of cladetyper

  Michal-Babins

  committed
  821b990

• Added theiaeuk specific workflow_series logic to qc trim ont

  Michal-Babins

  committed
  0dbc758

• Added versioning capture

  Michal-Babins

  committed
  63dcad3

Commits on Oct 8, 2024

• Reordered logic for rasusa and nanoq

  Michal-Babins

  committed
  6a45737

• Removed options for merlin magic that should be hidden

  Michal-Babins

  committed
  af72314

• Reorder logic for snippy variant if tag is C.Auris

  Michal-Babins

  committed
  4bd515d

• Added read qc and assembly qc

  Michal-Babins

  committed
  08a92fb

• updated md5 sum

  Michal-Babins

  committed
  5cc9407

• Initial commits for theiaeuk CI

  Michal-Babins

  committed
  021dbb7

Commits on Oct 9, 2024

• Removed unecessary tests

  Michal-Babins

  committed
  767f33a

Commits on Oct 18, 2024

• Added ont support for A. fumigatus & C. neoformans

  Michal-Babins

  committed
  d46d58f

• updated md5 sum for merlin magic

  Michal-Babins

  committed
  e23e9ab