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update doc dockers
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sage-wright committed Nov 25, 2024
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2 changes: 1 addition & 1 deletion docs/workflows/genomic_characterization/theiaprok.md
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Expand Up @@ -418,7 +418,7 @@ All input reads are processed through "[core tasks](#core-tasks-performed-for-al
| merlin_magic | **tbp_parser_coverage_regions_bed** | File | A bed file that lists the regions to be considered for QC | | Optional | FASTA, ONT, PE, SE |
| merlin_magic | **tbp_parser_coverage_threshold** | Int | The minimum coverage for a region to pass QC in tbp_parser | 100 | Optional | FASTA, ONT, PE, SE |
| merlin_magic | **tbp_parser_debug** | Boolean | Activate the debug mode on tbp_parser; increases logging outputs | TRUE | Optional | FASTA, ONT, PE, SE |
| merlin_magic | **tbp_parser_docker_image** | String | The Docker container to use for the task | us-docker.pkg.dev/general-theiagen/theiagen/tbp-parser:2.1.0 | Optional | FASTA, ONT, PE, SE |
| merlin_magic | **tbp_parser_docker_image** | String | The Docker container to use for the task | us-docker.pkg.dev/general-theiagen/theiagen/tbp-parser:2.1.1 | Optional | FASTA, ONT, PE, SE |
| merlin_magic | **tbp_parser_etha237_frequency** | Float | Minimum frequency for a mutation in ethA at protein position 237 to pass QC in tbp-parser | 0.1 | Optional | FASTA, ONT, PE, SE |
| merlin_magic | **tbp_parser_expert_rule_regions_bed** | File | A file that contains the regions where R mutations and expert rules are applied | | Optional | FASTA, ONT, PE, SE |
| merlin_magic | **tbp_parser_min_depth** | Int | Minimum depth for a variant to pass QC in tbp_parser | 10 | Optional | FASTA, ONT, PE, SE |
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2 changes: 1 addition & 1 deletion docs/workflows/standalone/tbprofiler_tngs.md
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Expand Up @@ -23,7 +23,7 @@ This workflow is still in experimental research stages. Documentation is minimal
| tbp_parser | **coverage_threshold** | Int | The minimum percentage of a region to exceed the minimum depth for a region to pass QC in tbp_parser | 100 | Optional |
| tbp_parser | **cpu** | Int | Number of CPUs to allocate to the task | 1 | Optional |
| tbp_parser | **disk_size** | Int | Amount of storage (in GB) to allocate to the task | 100 | Optional |
| tbp_parser | **docker** | String | The Docker container to use for the task | us-docker.pkg.dev/general-theiagen/theiagen/tbp-parser:2.1.0 | Optional |
| tbp_parser | **docker** | String | The Docker container to use for the task | us-docker.pkg.dev/general-theiagen/theiagen/tbp-parser:2.1.1 | Optional |
| tbp_parser | **etha237_frequency** | Float | Minimum frequency for a mutation in ethA at protein position 237 to pass QC in tbp-parser | 0.1 | Optional |
| tbp_parser | **expert_rule_regions_bed** | File | A file that contains the regions where R mutations and expert rules are applied | | Optional |
| tbp_parser | **memory** | Int | Amount of memory/RAM (in GB) to allocate to the task | 4 | Optional |
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