added 2 new resfinder string outputs to theiaprok_illumina_pe outputs

theiagen · Sep 20, 2023 · d17db06 · d17db06
1 parent 965ef29
commit d17db06
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/workflows/theiaprok/wf_theiaprok_illumina_pe.wdl b/workflows/theiaprok/wf_theiaprok_illumina_pe.wdl
@@ -625,6 +625,8 @@ workflow theiaprok_illumina_pe {
     File? resfinder_results = resfinder_task.resfinder_results_tab
     File? resfinder_pointfinder_pheno_table = resfinder_task.pointfinder_pheno_table
     File? resfinder_pointfinder_results = resfinder_task.pointfinder_results
+    String? resfinder_predicted_pheno_resistance = resfinder_task.resfinder_predicted_pheno_resistance
+    String? resfinder_predicted_xdr_shigella = resfinder_task.resfinder_predicted_xdr_shigella
     String? resfinder_db_version = resfinder_task.resfinder_db_version
     String? resfinder_docker = resfinder_task.resfinder_docker
     # MLST Typing