pass empty file for tests - kmerfinder_db

theiagen · Sep 19, 2023 · c834b89 · c834b89
1 parent c55ca10
commit c834b89
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Showing 2 changed files with 6 additions and 2 deletions.
diff --git a/tests/inputs/theiaprok/wf_theiaprok_illumina_pe.json b/tests/inputs/theiaprok/wf_theiaprok_illumina_pe.json
@@ -3,6 +3,7 @@
     "theiaprok_illumina_pe.read1_raw": "bactopia-tests/data/species/portiera/illumina/SRR2838702_R1.fastq.gz",
     "theiaprok_illumina_pe.read2_raw": "bactopia-tests/data/species/portiera/illumina/SRR2838702_R2.fastq.gz",
     "theiaprok_illumina_pe.skip_screen": true,
+    "theiaprok_illumina_pe.call_kmerfinder": false,
     "theiaprok_illumina_pe.read_QC_trim.read_processing": "trimmomatic",
     "theiaprok_illumina_pe.read_QC_trim.call_midas": false,
     "theiaprok_illumina_pe.read_QC_trim.midas.midas_db" : "./tests/inputs/empty-for-test.txt",
@@ -36,5 +37,6 @@
     "theiaprok_illumina_pe.merlin_magic.cladetyper.ref_clade5_annotated" : "./tests/inputs/empty-for-test.txt",
     "theiaprok_illumina_pe.bakta.bakta_db" : "./tests/inputs/empty-for-test.txt",
     "theiaprok_illumina_pe.gambit.gambit_db_signatures" : "./tests/inputs/completely-empty-for-test.txt",
-    "theiaprok_illumina_pe.gambit.gambit_db_genomes" : "./tests/inputs/completely-empty-for-test.txt"
+    "theiaprok_illumina_pe.gambit.gambit_db_genomes" : "./tests/inputs/completely-empty-for-test.txt",
+    "theiaprok_illumina_pe.gambit.kmerfinder_db" : "./tests/inputs/completely-empty-for-test.txt"
 }
diff --git a/tests/inputs/theiaprok/wf_theiaprok_illumina_se.json b/tests/inputs/theiaprok/wf_theiaprok_illumina_se.json
@@ -2,6 +2,7 @@
     "theiaprok_illumina_se.samplename": "test",
     "theiaprok_illumina_se.read1_raw": "bactopia-tests/data/species/portiera/illumina/SRR2838702_R1.fastq.gz",
     "theiaprok_illumina_se.skip_screen": true,
+    "theiaprok_illumina_pe.call_kmerfinder": false,
     "theiaprok_illumina_se.read_QC_trim.read_processing": "trimmomatic",
     "theiaprok_illumina_se.read_QC_trim.call_midas": false,
     "theiaprok_illumina_se.read_QC_trim.midas.midas_db" : "./tests/inputs/empty-for-test.txt",
@@ -35,5 +36,6 @@
     "theiaprok_illumina_se.merlin_magic.cladetyper.ref_clade5_annotated" : "./tests/inputs/empty-for-test.txt",
     "theiaprok_illumina_se.bakta.bakta_db" : "./tests/inputs/empty-for-test.txt",
     "theiaprok_illumina_se.gambit.gambit_db_signatures" : "./tests/inputs/completely-empty-for-test.txt",
-    "theiaprok_illumina_se.gambit.gambit_db_genomes" : "./tests/inputs/completely-empty-for-test.txt"
+    "theiaprok_illumina_se.gambit.gambit_db_genomes" : "./tests/inputs/completely-empty-for-test.txt",
+    "theiaprok_illumina_pe.gambit.kmerfinder_db" : "./tests/inputs/completely-empty-for-test.txt"
 }