Update hotspot-annotate-maf.R

taylor-lab · Sep 20, 2024 · 52355be · 52355be
1 parent 6325d38
commit 52355be
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/R/hotspot-annotate-maf.R b/R/hotspot-annotate-maf.R
@@ -18,14 +18,14 @@
 #' @name hotspot_annotate_maf
 NULL
 
-load_gene_annotation = function(oncokbbaseurl = ' https://data-legacy.oncokb.aws.mskcc.org/api/v1/genes') {
+load_gene_annotation = function(oncokbbaseurl = 'https://data-legacy.oncokb.aws.mskcc.org/api/v1/genes') {
     read_lines(oncokbbaseurl) %>%
         fromJSON()
 }
 
 #' @export
 #' @rdname hotspot_annotate_maf
-hotspot_annotate_maf = function(maf, oncokbbaseurl = ' https://data-legacy.oncokb.aws.mskcc.org/api/v1/genes', hotspot_tbl = NULL) {
+hotspot_annotate_maf = function(maf, oncokbbaseurl = 'https://data-legacy.oncokb.aws.mskcc.org/api/v1/genes', hotspot_tbl = NULL) {
 
     if (!inherits(maf, 'data.frame')) stop('Input MAF must be a data frame, preferrable VEP annotated')
     if (!is.null(hotspot_tbl)) {