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{lang}[gfbf/2023b] R v4.3.3- Loading branch information
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| name = 'R' | ||
| version = '4.3.3' | ||
|
|
||
| homepage = 'https://www.r-project.org/' | ||
| description = """R is a free software environment for statistical computing | ||
| and graphics.""" | ||
|
|
||
| toolchain = {'name': 'gfbf', 'version': '2023b'} | ||
|
|
||
| source_urls = ['https://cloud.r-project.org/src/base/R-%(version_major)s'] | ||
| sources = [SOURCE_TAR_GZ] | ||
| checksums = ['80851231393b85bf3877ee9e39b282e750ed864c5ec60cbd68e6e139f0520330'] | ||
|
|
||
| builddependencies = [ | ||
| ('pkgconf', '2.0.3'), | ||
| ('Autotools', '20220317'), | ||
| ] | ||
| dependencies = [ | ||
| ('X11', '20231019'), | ||
| ('Mesa', '23.1.9'), | ||
| ('libGLU', '9.0.3'), | ||
| ('cairo', '1.18.0'), | ||
| ('libreadline', '8.2'), | ||
| ('ncurses', '6.4'), | ||
| ('bzip2', '1.0.8'), | ||
| ('XZ', '5.4.4'), | ||
| ('zlib', '1.2.13'), | ||
| ('SQLite', '3.43.1'), | ||
| ('PCRE2', '10.42'), | ||
| ('libpng', '1.6.40'), # for plotting in R | ||
| ('libjpeg-turbo', '3.0.1'), # for plottting in R | ||
| ('LibTIFF', '4.6.0'), | ||
| ('Java', '11', '', SYSTEM), | ||
| ('libgit2', '1.7.2'), | ||
| ('OpenSSL', '1.1', '', SYSTEM), | ||
| ('cURL', '8.3.0'), | ||
| ('Tk', '8.6.13'), # for tcltk | ||
| ('HarfBuzz', '8.2.2'), # for textshaping | ||
| ('FriBidi', '1.0.13'), # for textshaping | ||
| ] | ||
|
|
||
| # Some R extensions (mclust, quantreg, waveslim for example) require the math library (-lm) to avoid undefined symbols. | ||
| # Adding it to FLIBS makes sure it is present when needed. | ||
| preconfigopts = 'export FLIBS="$FLIBS -lm" && ' | ||
|
|
||
| configopts = "--with-pic --enable-threads --enable-R-shlib" | ||
| # some recommended packages may fail in a parallel build (e.g. Matrix), and | ||
| # we're installing them anyway below | ||
| configopts += " --with-recommended-packages=no" | ||
|
|
||
| # specify that at least EasyBuild v3.5.0 is required, | ||
| # since we rely on the updated easyblock for R to configure correctly w.r.t. BLAS/LAPACK | ||
| easybuild_version = '3.5.0' | ||
|
|
||
| exts_default_options = { | ||
| 'source_urls': [ | ||
| 'https://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive | ||
| 'https://cran.r-project.org/src/contrib/', # current version of packages | ||
| 'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages | ||
| ], | ||
| 'source_tmpl': '%(name)s_%(version)s.tar.gz', | ||
| } | ||
|
|
||
| # !! order of packages is important !! | ||
| # packages updated on 4th March 2024 | ||
| exts_list = [ | ||
| # include packages that are part of the base installation of R, | ||
| # both to make sure they are available (via sanity check), | ||
| # and to be able to pass the check for required dependencies when installing extensions in parallel | ||
| 'base', | ||
| 'compiler', | ||
| 'datasets', | ||
| 'graphics', | ||
| 'grDevices', | ||
| 'grid', | ||
| 'methods', | ||
| 'parallel', | ||
| 'splines', | ||
| 'stats', | ||
| 'stats4', | ||
| 'tcltk', | ||
| 'tools', | ||
| 'utils', | ||
| ('rlang', '1.1.3', { | ||
| 'checksums': ['24a3424b5dc2c4bd3e5f7c0b54fbe1355028e329181b2d41f4464c8ade28bf0a'], | ||
| }), | ||
| ('Rcpp', '1.0.12', { | ||
| 'checksums': ['0c7359cc43beee02761aa3df2baccede1182d29d28c9cd49964b609305062bd0'], | ||
| }), | ||
| ('R6', '2.5.1', { | ||
| 'checksums': ['8d92bd29c2ed7bf15f2778618ffe4a95556193d21d8431a7f75e7e5fc102bf48'], | ||
| }), | ||
| ('cli', '3.6.2', { | ||
| 'checksums': ['4c0749e3711b2b6ae90fd992784303bc8d98039599cac1deb397239a7018e151'], | ||
| }), | ||
| ('base64enc', '0.1-3', { | ||
| 'checksums': ['6d856d8a364bcdc499a0bf38bfd283b7c743d08f0b288174fba7dbf0a04b688d'], | ||
| }), | ||
| ('rprojroot', '2.0.4', { | ||
| 'checksums': ['b5f463fb25a24dac7a4ca916be57dbe22b5262e1f41e53871ca83e57d4336e99'], | ||
| }), | ||
| ('xfun', '0.42', { | ||
| 'checksums': ['07bbfaed212ba1fcb9367624e8bc4936a7884e30e0efc561199acd0fcba5750a'], | ||
| }), | ||
| ('commonmark', '1.9.1', { | ||
| 'checksums': ['9517a13f4ce4a99bb157493453b04419b222cb65a9471cd3b11e5045ac0db53b'], | ||
| }), | ||
| ('highr', '0.10', { | ||
| 'checksums': ['ec55bc1ff66390ed66806dc2a7b6c17dbfd089b3d73fe2e369017f8cb4bc347b'], | ||
| }), | ||
| ('digest', '0.6.34', { | ||
| 'checksums': ['0b737552932f165d4158ac94631f90abfb02c510df14577d7aa900c8fd3d44d9'], | ||
| }), | ||
| ('desc', '1.4.3', { | ||
| 'checksums': ['54468da73dd78fc9e7c565c41cfe3331802c2134b2e61a9ad197215317092f26'], | ||
| }), | ||
| ('ellipsis', '0.3.2', { | ||
| 'checksums': ['a90266e5eb59c7f419774d5c6d6bd5e09701a26c9218c5933c9bce6765aa1558'], | ||
| }), | ||
| ('prettyunits', '1.2.0', { | ||
| 'checksums': ['f059f27e2a5c82e351fe05b87ad712f7afc273c651450453f59d99af5deeacea'], | ||
| }), | ||
| ('crayon', '1.5.2', { | ||
| 'checksums': ['70a9a505b5b3c0ee6682ad8b965e28b7e24d9f942160d0a2bad18eec22b45a7a'], | ||
| }), | ||
| ('stringi', '1.8.3', { | ||
| 'checksums': ['1602be8edd1dd8ac5a836f4077cbc9d6a312ca4b2c594a0486370e8c1e314925'], | ||
| }), | ||
| ('magrittr', '2.0.3', { | ||
| 'checksums': ['a2bff83f792a1acb801bfe6330bb62724c74d5308832f2cb6a6178336ace55d2'], | ||
| }), | ||
| ('evaluate', '0.23', { | ||
| 'checksums': ['c9cf9c37502b8fbfa78e4eb96b8c3d1789060e49505c86c07cb7476da804a45c'], | ||
| }), | ||
| ('ps', '1.7.6', { | ||
| 'checksums': ['52c35ffc3d1e1d984a94c7bbd671ef4ad70946990cbcd80e814e17937b056dd2'], | ||
| }), | ||
| ('processx', '3.8.3', { | ||
| 'checksums': ['1ad8c51482b89702fbbb6621b1a179c1ae67b78388b8fd9c841bbc8cf035d831'], | ||
| }), | ||
| ('callr', '3.7.5', { | ||
| 'checksums': ['18a11e8f7324d5b013149af69a32784aea7433863492aaabccd8d227b73b472c'], | ||
| }), | ||
| ('pkgbuild', '1.4.3', { | ||
| 'checksums': ['1583edb56c0afab6f99d0dd2235fd45999461f89e8ca50bc7c0b74211f109165'], | ||
| }), | ||
| ('fs', '1.6.3', { | ||
| 'checksums': ['fa82061e50d7a4d94b7e404f9f2b699e75ae8fbfb575fabdfc2c39f536c0f971'], | ||
| }), | ||
| ('utf8', '1.2.4', { | ||
| 'checksums': ['418f824bbd9cd868d2d8a0d4345545c62151d321224cdffca8b1ffd98a167b7d'], | ||
| }), | ||
| ('fansi', '1.0.6', { | ||
| 'checksums': ['ea9dc690dfe50a7fad7c5eb863c157d70385512173574c56f4253b6dfe431863'], | ||
| }), | ||
| ('pkgconfig', '2.0.3', { | ||
| 'checksums': ['330fef440ffeb842a7dcfffc8303743f1feae83e8d6131078b5a44ff11bc3850'], | ||
| }), | ||
| ('withr', '3.0.0', { | ||
| 'checksums': ['8c78eede6d0e648c23d38a6695f642aed2819ef708239d00b36cbc15eabbe0e7'], | ||
| }), | ||
| ('glue', '1.7.0', { | ||
| 'checksums': ['1af51b51f52c1aeb3bfe9349f55896dd78b5542ffdd5654e432e4d646e4a86dc'], | ||
| }), | ||
| ('rstudioapi', '0.15.0', { | ||
| 'checksums': ['935bc81dca37d3d6e77982bfe6e7fbd779e8606e5b7e00d0ba4c80fec0416ccf'], | ||
| }), | ||
| ('brio', '1.1.4', { | ||
| 'checksums': ['0cbbf38948682b2435eea69b04be59187b149183dc7562df71dc0d3e260e18e8'], | ||
| }), | ||
| ('pkgload', '1.3.4', { | ||
| 'checksums': ['60b04b948cda4dc56257b1e89f9b0a4b1273cacecdb2bd995d66dd76e89926ce'], | ||
| }), | ||
| ('fastmap', '1.1.1', { | ||
| 'checksums': ['3623809dd016ae8abd235200ba7834effc4b916915a059deb76044137c5c7173'], | ||
| }), | ||
| ('htmltools', '0.5.7', { | ||
| 'checksums': ['ecb0d82619063f49e4d001c44fcc1b811a06928fd66c2bb8c86632798d98b386'], | ||
| }), | ||
| ('yaml', '2.3.8', { | ||
| 'checksums': ['9ed079e2159cae214f3fefcbc4c8eb3b888ceabe902350adbdb1d181eda23fd8'], | ||
| }), | ||
| ('knitr', '1.45', { | ||
| 'checksums': ['ee2edea53bc53efa51d131ab5a0b0c829c0f950b79d3c6ee34705354bf7584fb'], | ||
| }), | ||
| ('mime', '0.12', { | ||
| 'checksums': ['a9001051d6c1e556e881910b1816b42872a1ee41ab76d0040ce66a27135e3849'], | ||
| }), | ||
| ('praise', '1.0.0', { | ||
| 'checksums': ['5c035e74fd05dfa59b03afe0d5f4c53fbf34144e175e90c53d09c6baedf5debd'], | ||
| }), | ||
| ('jsonlite', '1.8.8', { | ||
| 'checksums': ['7de21316984c3ba3d7423d12f43d1c30c716007c5e39bf07e11885e0ceb0caa4'], | ||
| }), | ||
| ('lifecycle', '1.0.4', { | ||
| 'checksums': ['ada4d3c7e84b0c93105e888647c5754219a8334f6e1f82d5afaf83d4855b91cc'], | ||
| }), | ||
| ('vctrs', '0.6.5', { | ||
| 'checksums': ['43167d2248fd699594044b5c8f1dbb7ed163f2d64761e08ba805b04e7ec8e402'], | ||
| }), | ||
| ('stringr', '1.5.1', { | ||
| 'checksums': ['a4adec51bb3f04214b1d8ef40d3a58949f21b1497cbeaf2ba552e0891eef45de'], | ||
| }), | ||
| ('pillar', '1.9.0', { | ||
| 'checksums': ['f23eb486c087f864c2b4072d5cba01d5bebf2f554118bcba6886d8dbceb87acc'], | ||
| }), | ||
| ('tibble', '3.2.1', { | ||
| 'checksums': ['65a72d0c557fd6e7c510d150c935ed6ced5db7d05fc20236b370f11428372131'], | ||
| }), | ||
| ('diffobj', '0.3.5', { | ||
| 'checksums': ['d860a79b1d4c9e369282d7391b539fe89228954854a65ba47181407c53e3cf60'], | ||
| }), | ||
| ('rematch2', '2.1.2', { | ||
| 'checksums': ['fe9cbfe99dd7731a0a2a310900d999f80e7486775b67f3f8f388c30737faf7bb'], | ||
| }), | ||
| ('waldo', '0.5.2', { | ||
| 'checksums': ['82cdae1ab2c5e7e5dbf5c6bdf832020b46e152732053fb45de7c9a81afdf2e05'], | ||
| }), | ||
| ('testthat', '3.2.1', { | ||
| 'checksums': ['1d980e611b01c194007639a100c3ddaeaab77786d32f81680f497f99e60748ad'], | ||
| }), | ||
| ('xml2', '1.3.6', { | ||
| 'checksums': ['e81991ff99bff3616dde8683c1327194e3ea64fa3b8062f52d8ce32673dd308f'], | ||
| }), | ||
| ('curl', '5.2.1', { | ||
| 'checksums': ['4a7a4d8c08aa1bca2fcd9c58ade7b4b0ea2ed9076d0521071be29baac8adfa90'], | ||
| }), | ||
| ('sys', '3.4.2', { | ||
| 'checksums': ['b7bdce66f0fb681830ea6fb77b5a2c6babb43920abb1eddc733f95c0a63ce5b3'], | ||
| }), | ||
| ('askpass', '1.2.0', { | ||
| 'checksums': ['b922369781934d0ffc8d0c0177e8ace56796c2e6a726f65e460c16f792592cef'], | ||
| }), | ||
| ('openssl', '2.1.1', { | ||
| 'checksums': ['faa726f9af2a97d5fa1e1044f4a38ee2edd4c81f0beb5830f6a36ff249b64bdc'], | ||
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| ('httr', '1.4.7', { | ||
| 'checksums': ['1555e6c2fb67bd38ff11b479f74aa287b2d93f4add487aec53b836ff07de3a3a'], | ||
| }), | ||
| ('jquerylib', '0.1.4', { | ||
| 'checksums': ['f0bcc11dcde3a6ff180277e45c24642d3da3c8690900e38f44495efbc9064411'], | ||
| }), | ||
| ('rappdirs', '0.3.3', { | ||
| 'checksums': ['49959f65b45b0b189a2792d6c1339bef59674ecae92f8c2ed9f26ff9e488c184'], | ||
| }), | ||
| ('sass', '0.4.8', { | ||
| 'checksums': ['42ba2930cd22ad9f5e0022b9ac53bdbc4c9250f00e0646e6502f635a6db3c40c'], | ||
| }), | ||
| ('purrr', '1.0.2', { | ||
| 'checksums': ['2c1bc6bb88433dff0892b41136f2f5c23573b335ff35a4775c72aa57b48bbb63'], | ||
| }), | ||
| ('cachem', '1.0.8', { | ||
| 'checksums': ['ea9ca919fe615dce8770758ecc2fc88ac99074f66ff1cde3a0b95d40007f45c2'], | ||
| }), | ||
| ('memoise', '2.0.1', { | ||
| 'checksums': ['f85034ee98c8ca07fb3cd826142c1cd1e1e5747075a94c75a45783bbc4fe2deb'], | ||
| }), | ||
| ('bslib', '0.6.1', { | ||
| 'checksums': ['642735afd7d3895f1ac8c5a5f7f5e08001bfabcf62a56d2d85904655a2e931db'], | ||
| }), | ||
| ('fontawesome', '0.5.2', { | ||
| 'checksums': ['da3de2a9717084d1400d48edd783f06c66b8c910ce9c8d753d1b7d99be1c5cc9'], | ||
| }), | ||
| ('tinytex', '0.49', { | ||
| 'checksums': ['941169ec65445d172658d0fb6ea8d839736f3f1b5f6ce20637d7d8e299663145'], | ||
| }), | ||
| ('rmarkdown', '2.25', { | ||
| 'checksums': ['06e4662666fe018fbe3bef3531280a461c7bc24bb00f34b9d4c7b08d52210155'], | ||
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| ('downlit', '0.4.3', { | ||
| 'checksums': ['6c0fbe98ece8a511973263f8e8a35574df0cfc45edea7452b53b8d326436b3bd'], | ||
| }), | ||
| ('cpp11', '0.4.7', { | ||
| 'checksums': ['801d1266824c3972642bce2db2a5fd0528a65ec845c58eb5a886edf082264344'], | ||
| }), | ||
| ('systemfonts', '1.0.5', { | ||
| 'checksums': ['840ffb1d8293739c79cbc868101d9f9a84f4a9de4c7b3625e30af2fb63e15823'], | ||
| }), | ||
| ('textshaping', '0.3.7', { | ||
| 'checksums': ['fa924dbe1fb4138b80d6c26ee42f4203843f1d34f77e2a5e42514e6fcc97ec42'], | ||
| }), | ||
| ('ragg', '1.2.7', { | ||
| 'checksums': ['d77a18662d127881dcb5046033eb809293ad9ad439fa4b217202b8cef4280c9f'], | ||
| }), | ||
| ('whisker', '0.4.1', { | ||
| 'checksums': ['bf5151494508032f68ac41e211bda80da9087c65c7068ffdd12f16669bf1f2bc'], | ||
| }), | ||
| ('pkgdown', '2.0.7', { | ||
| 'checksums': ['f33872869dfa8319182d87e90eab3245ff69293b3b791471bf9538afb81b356a'], | ||
| }), | ||
| ('htmlwidgets', '1.6.4', { | ||
| 'checksums': ['7cb08f0b30485dac26f72e4056ec4ed8825d1398e8b9f25ed63db228fe3a0ed0'], | ||
| }), | ||
| ('profvis', '0.3.8', { | ||
| 'checksums': ['ec02c75bc9907a73564e691adfa8e06651ca0bd73b7915412960231cd265b4b2'], | ||
| }), | ||
| ('urlchecker', '1.0.1', { | ||
| 'checksums': ['62165ddbe1b748b58c71a50c8f07fdde6f3d19a7b39787b9fa2b4f9216250318'], | ||
| }), | ||
| ('later', '1.3.2', { | ||
| 'checksums': ['52f5073d33cd0d3c12e56526c9c53c323ebafcc79b22cc6e51fb0c41ee2b561e'], | ||
| }), | ||
| ('promises', '1.2.1', { | ||
| 'checksums': ['3ce0a26df39ea27536877ec6db13083b2952108245024baa8b40ae856d2ce5be'], | ||
| }), | ||
| ('xtable', '1.8-4', { | ||
| 'checksums': ['5abec0e8c27865ef0880f1d19c9f9ca7cc0fd24eadaa72bcd270c3fb4075fd1c'], | ||
| }), | ||
| ('httpuv', '1.6.14', { | ||
| 'checksums': ['4026acae26bd99873e269b062f343f2239131130b43fdfd6a1a5a89b913cd181'], | ||
| }), | ||
| ('sourcetools', '0.1.7-1', { | ||
| 'checksums': ['96812bdb7a0dd99690d84e4b0a3def91389e4290f53f01919ef28a50554e31d1'], | ||
| }), | ||
| ('shiny', '1.8.0', { | ||
| 'checksums': ['f28740ba28707e8b3dabb2ad27b002dae555317010660702163bb0daefe04641'], | ||
| }), | ||
| ('miniUI', '0.1.1.1', { | ||
| 'checksums': ['452b41133289f630d8026507263744e385908ca025e9a7976925c1539816b0c0'], | ||
| }), | ||
| ('brew', '1.0-10', { | ||
| 'checksums': ['4181f7334e032ae0775c5dec49d6137eb25d5430ca3792d321793307b3dda38f'], | ||
| }), | ||
| ('roxygen2', '7.3.1', { | ||
| 'checksums': ['215e9fa9c0e73cb33f9870854c97b25c1a6386f519f69f397123f1a66656e2c8'], | ||
| }), | ||
| ('rversions', '2.1.2', { | ||
| 'checksums': ['de5818233e8271132fe8ea70145618950b35786e0d2f270e39bf3338f3b8b160'], | ||
| }), | ||
| ('sessioninfo', '1.2.2', { | ||
| 'checksums': ['f56283857c53ac8691e3747ed48fe03e893d8ff348235bff7364658bcfb0c7cb'], | ||
| }), | ||
| ('xopen', '1.0.0', { | ||
| 'checksums': ['e207603844d69c226142be95281ba2f4a056b9d8cbfae7791ba60535637b3bef'], | ||
| }), | ||
| ('rcmdcheck', '1.4.0', { | ||
| 'checksums': ['bbd4ef7d514b8c2076196a7c4a6041d34623d55fbe73f2771758ce61fd32c9d0'], | ||
| }), | ||
| ('remotes', '2.4.2.1', { | ||
| 'checksums': ['7ba8ca9a652d60bcdea25dbd43bd1e055e97b031c05e0bc3fac43bf245c1209d'], | ||
| }), | ||
| ('clipr', '0.8.0', { | ||
| 'checksums': ['32c2931992fbec9c31b71de3e27059f1cbb45b4b1f45fd42e0e8dbcec6de3be9'], | ||
| }), | ||
| ('ini', '0.3.1', { | ||
| 'checksums': ['7b191a54019c8c52d6c2211c14878c95564154ec4865f57007953742868cd813'], | ||
| }), | ||
| ('gitcreds', '0.1.2', { | ||
| 'checksums': ['41c6abcca5635062b123ffb5af2794770eca5ebd97b05c5a64b24fa1c803c75d'], | ||
| }), | ||
| ('httr2', '1.0.0', { | ||
| 'checksums': ['cb852d6f560c329a7dc17aa760f09a0950413513dc8abfc3facb6418b2934a49'], | ||
| }), | ||
| ('gh', '1.4.0', { | ||
| 'checksums': ['68c69fcd18429b378e639a09652465a4e92b7b5b5704804d0c5b1ca2b9b58b71'], | ||
| }), | ||
| ('credentials', '2.0.1', { | ||
| 'checksums': ['2c7cfc45bd4afa9a2c2b85d43e907b212da3468781e1b617737bd095253c358b'], | ||
| }), | ||
| ('zip', '2.3.1', { | ||
| 'checksums': ['83754408781c525917f36535865d28214893de0778b5f337e050cb543cacc28f'], | ||
| }), | ||
| ('gert', '2.0.1', { | ||
| 'checksums': ['0ed784837809ce89797ea77834d420e89351728f70d8d2f4b34487df813cd092'], | ||
| }), | ||
| ('usethis', '2.2.3', { | ||
| 'checksums': ['8d0c98995c23b5f4b5b95cd453557d2d15faa7399cc01bff304f5b15cb0cdeb3'], | ||
| }), | ||
| ('devtools', '2.4.5', { | ||
| 'checksums': ['38160ebd839acdec7ebf0699a085b4ab1ebd5500d3c57a9fa7ae484f1909904b'], | ||
| }), | ||
| ] | ||
|
|
||
| moduleclass = 'lang' |