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@sys-bio

UW Sauro Lab

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  1. tellurium tellurium Public

    Python Environment for Modeling and Simulating Biological Systems

    Python 109 36

  2. roadrunner roadrunner Public

    Forked from AndySomogyi/sbmlsolver

    libRoadRunner: A high-performance SBML simulator

    C++ 40 25

Repositories

Showing 10 of 107 repositories
  • SBMLNetwork Public Forked from adelhpour/SBMLNetwork

    SBMLNetwork is a library designed to enable software developers and systems biologists to interact with the graphical representation of SBML (Systems Biology Markup Language) models.

    sys-bio/SBMLNetwork’s past year of commit activity
    C++ 0 MIT 2 6 0 Updated Nov 27, 2024
  • antimony Public
    sys-bio/antimony’s past year of commit activity
    C++ 16 BSD-3-Clause 4 25 1 Updated Nov 27, 2024
  • ratesb_python Public

    Analysis of rate laws in reaction networks.

    sys-bio/ratesb_python’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Nov 26, 2024
  • libroadrunner-deps Public

    Dependencies for libroadrunner

    sys-bio/libroadrunner-deps’s past year of commit activity
    CMake 3 5 0 0 Updated Nov 23, 2024
  • SimBioUI Public

    Web systems biology simulator

    sys-bio/SimBioUI’s past year of commit activity
    JavaScript 0 MIT 2 12 0 Updated Nov 22, 2024
  • tellurium Public

    Python Environment for Modeling and Simulating Biological Systems

    sys-bio/tellurium’s past year of commit activity
    Python 109 Apache-2.0 36 123 4 Updated Nov 19, 2024
  • temp-biomodels Public

    Temporary place for coordination of updating existing Biomodels

    sys-bio/temp-biomodels’s past year of commit activity
    Component Pascal 2 CC0-1.0 2 15 0 Updated Nov 19, 2024
  • AntimonyEditor Public

    Antimony Web Editor: A Web Editor for the Antimony Modeling Language

    sys-bio/AntimonyEditor’s past year of commit activity
    TypeScript 0 MIT 1 16 1 Updated Nov 12, 2024
  • PaperSummaryDataset Public

    A workflow for generating summaries of research papers on biological models using generative AI.

    sys-bio/PaperSummaryDataset’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Nov 12, 2024
  • evolution Public

    Tool used to create oscillatory networks. Generates reaction network models in Antimony, which can be easily converted to SBML (SBML.org) for further analysis. This is the main repository for Evolution, superseding the original one at https://github.com/ltatka/evolution.

    sys-bio/evolution’s past year of commit activity
    C 0 MIT 0 0 0 Updated Nov 6, 2024
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