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Bdanek/halo main 2 #207

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Bdanek/halo main 2 #207

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Commits on Apr 22, 2023

  1. modify eICU parsing for SyntheticFairness task

    Benjamin Danek committed Apr 22, 2023
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Commits on Apr 23, 2023

  1. gender & ethnicity nans to str

    @BPDanek
    BPDanek committed Apr 23, 2023
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Commits on May 10, 2023

  1. upgrade from python 3.8 to 3.11

    @ycq091044
    ycq091044 committed May 10, 2023
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  2. upgrade from python 3.8 to 3.11

    @ycq091044
    ycq091044 committed May 10, 2023
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  3. restrict the urllib3 version

    @ycq091044
    ycq091044 committed May 10, 2023
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  4. add docs for molerec and mimicextract dataset

    @ycq091044
    ycq091044 committed May 10, 2023
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  5. add rst files to outline

    @ycq091044
    ycq091044 committed May 10, 2023
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  6. fix illformed dependency

    @ycq091044
    ycq091044 committed May 10, 2023
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  7. minor style update

    @ycq091044
    ycq091044 committed May 10, 2023
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Commits on May 16, 2023

  1. checkin prior to dev

    @BPDanek
    BPDanek committed May 16, 2023
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Commits on Jun 1, 2023

  1. aggregator & getbatch function implemented first pass

    @BPDanek
    BPDanek committed Jun 1, 2023
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  2. check in before converting from samples to batch data

    @BPDanek
    BPDanek committed Jun 1, 2023
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  3. clean up artifacts

    @BPDanek
    BPDanek committed Jun 1, 2023
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Commits on Jun 2, 2023

  1. checking to merge with bdanek/ai4health

    @BPDanek
    BPDanek committed Jun 2, 2023
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  2. fix omop doc typo (#166)

    @BPDanek
    BPDanek authored Jun 2, 2023
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Commits on Jun 6, 2023

  1. Merge pull request #168 from sunlabuiuc/bdanek/ai4health 

    Improve eICU parser for Synthetic Data Generation
    @BPDanek
    BPDanek authored Jun 6, 2023
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Commits on Jun 7, 2023

  1. complete trainer + adjust eICU

    @BPDanek
    BPDanek committed Jun 7, 2023
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Commits on Jun 18, 2023

  1. add inter-visit gaps + generate synthetic samples complete

    @BPDanek
    BPDanek committed Jun 18, 2023
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  2. most of eval done

    @BPDanek
    BPDanek committed Jun 18, 2023
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Commits on Jun 19, 2023

  1. compelte evaluator & plotter

    @BPDanek
    BPDanek committed Jun 19, 2023
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Commits on Jun 21, 2023

  1. evaluation complete

    @BPDanek
    BPDanek committed Jun 21, 2023
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Commits on Jun 23, 2023

  1. checking training results

    @BPDanek
    BPDanek committed Jun 23, 2023
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Commits on Jun 24, 2023

  1. remove images

    @BPDanek
    BPDanek committed Jun 24, 2023
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  2. update model config + trainer paths

    @BPDanek
    BPDanek committed Jun 24, 2023
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  3. update paths

    @BPDanek
    BPDanek committed Jun 24, 2023
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  4. bug

    @BPDanek
    BPDanek committed Jun 24, 2023
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  5. pself.processor

    @BPDanek
    BPDanek committed Jun 24, 2023
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Commits on Jun 25, 2023

  1. batch_size from generator in plotter

    @BPDanek
    BPDanek committed Jun 25, 2023
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Commits on Jul 15, 2023

  1. add event handlers

    @BPDanek
    BPDanek committed Jul 15, 2023
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Commits on Jul 22, 2023

  1. pandrallel ram limit

    @BPDanek
    BPDanek committed Jul 22, 2023
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  2. refactor

    @BPDanek
    BPDanek committed Jul 22, 2023
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Commits on Jul 23, 2023

  1. parse_to_tables with inter-visit-time-gap

    Benjamin Danek committed Jul 23, 2023
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  2. fix bug in halo <> pyhealth dataset

    Benjamin Danek committed Jul 23, 2023
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  3. fix bug

    @BPDanek
    BPDanek committed Jul 23, 2023
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Commits on Jul 24, 2023

  1. checking for training

    @BPDanek
    BPDanek committed Jul 24, 2023
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Commits on Jul 27, 2023

  1. add docs

    @BPDanek
    BPDanek committed Jul 27, 2023
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Commits on Aug 3, 2023

  1. debug with Theodorou

    @BPDanek
    BPDanek committed Aug 3, 2023
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Commits on Aug 4, 2023

  1. fix bugs + paths

    @BPDanek
    BPDanek committed Aug 4, 2023
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  2. compute inter-visit gap bug

    @BPDanek
    BPDanek committed Aug 4, 2023
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  3. Merge pull request #165 from sunlabuiuc/bdanek/halo_main_2 

    HALO Synthetic Data Generation
    @BPDanek
    BPDanek authored Aug 4, 2023
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Commits on Aug 5, 2023

  1. update conversion to pyhealth format

    @BPDanek
    BPDanek committed Aug 5, 2023
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  2. add patient id to tables

    @BPDanek
    BPDanek committed Aug 5, 2023
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Commits on Aug 10, 2023

  1. Minor bug fixes

    Brandon Theodorou committed Aug 10, 2023
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  2. More minor fixes

    Brandon Theodorou committed Aug 10, 2023
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Commits on Aug 13, 2023

  1. Merge branch 'bdanek/halo_main_2' into synthetic_data

    @BPDanek
    BPDanek authored Aug 13, 2023
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  2. Merge pull request #202 from sunlabuiuc/synthetic_data 

    Synthetic data
    @BPDanek
    BPDanek authored Aug 13, 2023
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Commits on Aug 23, 2023

  1. Add use histograms to handle continuous values

    @BPDanek
    BPDanek committed Aug 23, 2023
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Commits on Sep 8, 2023

  1. automatically compute lab bins

    @BPDanek
    BPDanek committed Sep 8, 2023
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Commits on Sep 13, 2023

  1. Lots of changes

    Brandon Theodorou committed Sep 13, 2023
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Commits on Sep 18, 2023

  1. Patient demographic changes

    Brandon Theodorou committed Sep 18, 2023
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Commits on Sep 19, 2023

  1. Minor changes

    Brandon Theodorou committed Sep 19, 2023
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  2. Minor changes

    Brandon Theodorou committed Sep 19, 2023
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  3. Added handling for new labs we don't support

    Brandon Theodorou committed Sep 19, 2023
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Commits on Sep 20, 2023

  1. Everything through dataset conversion

    Brandon Theodorou committed Sep 20, 2023
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  2. Everything through dataset conversion

    Brandon Theodorou committed Sep 20, 2023
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  3. Finished initial HALO pipeline

    Brandon Theodorou committed Sep 20, 2023
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Commits on Oct 2, 2023

  1. Added the ability to skip straight to training, added label function … 

    …robustness
    Brandon Theodorou committed Oct 2, 2023
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  2. Added support for k-fold validation setup

    Brandon Theodorou committed Oct 2, 2023
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  3. Added machinery for fairness evaluations with synthetic data

    Brandon Theodorou committed Oct 2, 2023
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Commits on Nov 16, 2023

  1. Updated groups, added fairplay baselines

    Brandon Theodorou committed Nov 16, 2023
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  2. Fixed full label function

    Brandon Theodorou committed Nov 16, 2023
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  3. Fix elderly misspelled as eldery

    Brandon Theodorou committed Nov 16, 2023
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Commits on Dec 18, 2023

  1. Added fairness metrics

    Brandon Theodorou committed Dec 18, 2023
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